miRNA display CGI


Results 41 - 60 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 3' -60.8 NC_005261.1 + 99783 0.66 0.669743
Target:  5'- cGGCCCGggucCCAgucgcggcGCGGAUgGCgaacagcgCGCCGUCc -3'
miRNA:   3'- -CCGGGC----GGU--------CGCCUA-CGa-------GCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 30963 0.66 0.669743
Target:  5'- aGGCCCGCC-GCGacgGCcCGCCGc-- -3'
miRNA:   3'- -CCGGGCGGuCGCcuaCGaGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 10524 0.66 0.659774
Target:  5'- gGGCCC-CgCGGCGc--GCUCGCUGUCg -3'
miRNA:   3'- -CCGGGcG-GUCGCcuaCGAGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 134357 0.66 0.659774
Target:  5'- cGCgCCGCCGcGCGGGggGCggCGCCG-CUg -3'
miRNA:   3'- cCG-GGCGGU-CGCCUa-CGa-GCGGUaGA- -5'
23760 3' -60.8 NC_005261.1 + 36958 0.66 0.669743
Target:  5'- aGGCCCGCCGcGCGGcgcagagcucgGUGCgggcuccaGCCGg-- -3'
miRNA:   3'- -CCGGGCGGU-CGCC-----------UACGag------CGGUaga -5'
23760 3' -60.8 NC_005261.1 + 123921 0.66 0.659774
Target:  5'- cGGCCCG--AGCaGGUGCgCGCCcgCUa -3'
miRNA:   3'- -CCGGGCggUCGcCUACGaGCGGuaGA- -5'
23760 3' -60.8 NC_005261.1 + 182 0.66 0.656779
Target:  5'- cGCCCcuggugcucccgggGCCAGCGG-UGC-CGCCGc-- -3'
miRNA:   3'- cCGGG--------------CGGUCGCCuACGaGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 50511 0.66 0.659774
Target:  5'- cGCCCaGCCAGCGcagcaggGC-CGUCGUCUu -3'
miRNA:   3'- cCGGG-CGGUCGCcua----CGaGCGGUAGA- -5'
23760 3' -60.8 NC_005261.1 + 76016 0.66 0.679683
Target:  5'- uGGCgCCGCgCAGCGccgcggGCgccccgcgCGCCAUCa -3'
miRNA:   3'- -CCG-GGCG-GUCGCcua---CGa-------GCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 132610 0.67 0.619763
Target:  5'- cGGCgagCCGCCAGgGGgcGCUggCGCCGa-- -3'
miRNA:   3'- -CCG---GGCGGUCgCCuaCGA--GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 1077 0.67 0.619763
Target:  5'- uGGCCCcgcuCCAGgGcGAgcccgGCUCGUCGUCc -3'
miRNA:   3'- -CCGGGc---GGUCgC-CUa----CGAGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 66062 0.67 0.633775
Target:  5'- gGGCCCGCgguccccuccagcccCAGCaGAUGCgcggccaCGUCAUCc -3'
miRNA:   3'- -CCGGGCG---------------GUCGcCUACGa------GCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 57381 0.67 0.588827
Target:  5'- cGCCCGCCAGCagcucggGGA-GCgCGCCcgUg -3'
miRNA:   3'- cCGGGCGGUCG-------CCUaCGaGCGGuaGa -5'
23760 3' -60.8 NC_005261.1 + 12135 0.67 0.589822
Target:  5'- cGCCCGCCGccGCGGcgGC-CGCgCAg-- -3'
miRNA:   3'- cCGGGCGGU--CGCCuaCGaGCG-GUaga -5'
23760 3' -60.8 NC_005261.1 + 102162 0.67 0.599782
Target:  5'- aGCUgCGCCAGCGGcgGCg-GCaCGUCg -3'
miRNA:   3'- cCGG-GCGGUCGCCuaCGagCG-GUAGa -5'
23760 3' -60.8 NC_005261.1 + 29308 0.67 0.599782
Target:  5'- uGGCCCGgCAGCGcGccGC-CGCCGc-- -3'
miRNA:   3'- -CCGGGCgGUCGC-CuaCGaGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 121829 0.67 0.599782
Target:  5'- cGGgCCGCC-GCGGcgGCgcaccggCGCCAg-- -3'
miRNA:   3'- -CCgGGCGGuCGCCuaCGa------GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 91483 0.67 0.599782
Target:  5'- cGGCgCCGCC-GCGGccGC-CGCCcgCc -3'
miRNA:   3'- -CCG-GGCGGuCGCCuaCGaGCGGuaGa -5'
23760 3' -60.8 NC_005261.1 + 4665 0.67 0.609764
Target:  5'- cGGCCgCGgCGGCGGcgGCccccgUGUCAUCc -3'
miRNA:   3'- -CCGG-GCgGUCGCCuaCGa----GCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 61646 0.67 0.609764
Target:  5'- cGUCCGCCGGCGGAcUGa--GCCGa-- -3'
miRNA:   3'- cCGGGCGGUCGCCU-ACgagCGGUaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.