Results 61 - 80 of 168 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23760 | 3' | -60.8 | NC_005261.1 | + | 109811 | 0.67 | 0.629771 |
Target: 5'- cGGCgCCGCUuccgccGCGGcgGC-CGCCGaaUCUg -3' miRNA: 3'- -CCG-GGCGGu-----CGCCuaCGaGCGGU--AGA- -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 80660 | 0.67 | 0.629771 |
Target: 5'- uGGUgUGCUcGCGG-UGCgCGCCGUCg -3' miRNA: 3'- -CCGgGCGGuCGCCuACGaGCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 132610 | 0.67 | 0.619763 |
Target: 5'- cGGCgagCCGCCAGgGGgcGCUggCGCCGa-- -3' miRNA: 3'- -CCG---GGCGGUCgCCuaCGA--GCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 102285 | 0.67 | 0.619763 |
Target: 5'- uGCCgCGCCAGCGGccGCggGUCGUa- -3' miRNA: 3'- cCGG-GCGGUCGCCuaCGagCGGUAga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 121829 | 0.67 | 0.599782 |
Target: 5'- cGGgCCGCC-GCGGcgGCgcaccggCGCCAg-- -3' miRNA: 3'- -CCgGGCGGuCGCCuaCGa------GCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 29308 | 0.67 | 0.599782 |
Target: 5'- uGGCCCGgCAGCGcGccGC-CGCCGc-- -3' miRNA: 3'- -CCGGGCgGUCGC-CuaCGaGCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 68861 | 0.67 | 0.619763 |
Target: 5'- cGCCCucuGCC-GCGGcUGUgCGCCGUCg -3' miRNA: 3'- cCGGG---CGGuCGCCuACGaGCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 95727 | 0.67 | 0.619763 |
Target: 5'- gGGCCCGCCgcgcucAGCGGc-GC-CGCCGc-- -3' miRNA: 3'- -CCGGGCGG------UCGCCuaCGaGCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 47459 | 0.67 | 0.619763 |
Target: 5'- cGGCCCGCUugcGCGGggGCUgGgCGa-- -3' miRNA: 3'- -CCGGGCGGu--CGCCuaCGAgCgGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 1077 | 0.67 | 0.619763 |
Target: 5'- uGGCCCcgcuCCAGgGcGAgcccgGCUCGUCGUCc -3' miRNA: 3'- -CCGGGc---GGUCgC-CUa----CGAGCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 137790 | 0.67 | 0.609764 |
Target: 5'- gGGCCCcgccgcccgcGCCGGCGccgccccuGGUGCUCGCgGggCUg -3' miRNA: 3'- -CCGGG----------CGGUCGC--------CUACGAGCGgUa-GA- -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 4665 | 0.67 | 0.609764 |
Target: 5'- cGGCCgCGgCGGCGGcgGCccccgUGUCAUCc -3' miRNA: 3'- -CCGG-GCgGUCGCCuaCGa----GCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 61646 | 0.67 | 0.609764 |
Target: 5'- cGUCCGCCGGCGGAcUGa--GCCGa-- -3' miRNA: 3'- cCGGGCGGUCGCCU-ACgagCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 118570 | 0.68 | 0.569997 |
Target: 5'- uGCCCGCgCGcGCGGcgGCgcgCGCCGc-- -3' miRNA: 3'- cCGGGCG-GU-CGCCuaCGa--GCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 110011 | 0.68 | 0.540587 |
Target: 5'- cGCCCGCCGGC----GC-CGCCGUCc -3' miRNA: 3'- cCGGGCGGUCGccuaCGaGCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 50120 | 0.68 | 0.569997 |
Target: 5'- aGGgCCGCCAGCaGGuccacaagcuGUGCguugGCCGUCg -3' miRNA: 3'- -CCgGGCGGUCG-CC----------UACGag--CGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 5909 | 0.68 | 0.560144 |
Target: 5'- cGGCCgGCCGGCuGGcuaGCUCGCUc--- -3' miRNA: 3'- -CCGGgCGGUCG-CCua-CGAGCGGuaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 98606 | 0.68 | 0.550339 |
Target: 5'- cGCCCGCaaaaucCGGCGGGuaUGCgUCGCCGa-- -3' miRNA: 3'- cCGGGCG------GUCGCCU--ACG-AGCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 67607 | 0.68 | 0.560144 |
Target: 5'- aGCCCGaaGGCGGAcGCcgCGCCAa-- -3' miRNA: 3'- cCGGGCggUCGCCUaCGa-GCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 38678 | 0.68 | 0.569997 |
Target: 5'- gGGCCCGCCAGUcucgcGCUgGCCGg-- -3' miRNA: 3'- -CCGGGCGGUCGccua-CGAgCGGUaga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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