miRNA display CGI


Results 101 - 120 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 3' -60.8 NC_005261.1 + 117995 0.69 0.465089
Target:  5'- cGGCCUGaCGGCGGcgGCgcuggaCGCUGUCg -3'
miRNA:   3'- -CCGGGCgGUCGCCuaCGa-----GCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 59575 0.69 0.465089
Target:  5'- cGCgCGCCgcAGCGGGUGCcgCGCCGc-- -3'
miRNA:   3'- cCGgGCGG--UCGCCUACGa-GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 59494 0.69 0.465089
Target:  5'- cGCCgCGCCAGCGGcgGCggUCGCacgCg -3'
miRNA:   3'- cCGG-GCGGUCGCCuaCG--AGCGguaGa -5'
23760 3' -60.8 NC_005261.1 + 47268 0.69 0.465089
Target:  5'- cGGCCCGCCGGCGaaGAgcgccGCgUGCCA-CUg -3'
miRNA:   3'- -CCGGGCGGUCGC--CUa----CGaGCGGUaGA- -5'
23760 3' -60.8 NC_005261.1 + 4077 0.69 0.474241
Target:  5'- -cCCCGaCCGGCGGcaGCggCGCCGUCa -3'
miRNA:   3'- ccGGGC-GGUCGCCuaCGa-GCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 46353 0.69 0.465089
Target:  5'- cGGUCCGgCAGgGGAacccgacgaagUGCUCGCUcUCg -3'
miRNA:   3'- -CCGGGCgGUCgCCU-----------ACGAGCGGuAGa -5'
23760 3' -60.8 NC_005261.1 + 23834 0.69 0.483482
Target:  5'- gGGCCgGCUAG-GGuggGCUCGCCGg-- -3'
miRNA:   3'- -CCGGgCGGUCgCCua-CGAGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 127276 0.69 0.511706
Target:  5'- gGGCCCGCCcgccGCGGggGCa-GCCcUCc -3'
miRNA:   3'- -CCGGGCGGu---CGCCuaCGagCGGuAGa -5'
23760 3' -60.8 NC_005261.1 + 117723 0.69 0.511706
Target:  5'- gGGCCCGCaAGCGGccGCgcgcuggCGCCGc-- -3'
miRNA:   3'- -CCGGGCGgUCGCCuaCGa------GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 85358 0.69 0.511706
Target:  5'- cGGCCCGCUga-GGAUGUUCGCgCcgCc -3'
miRNA:   3'- -CCGGGCGGucgCCUACGAGCG-GuaGa -5'
23760 3' -60.8 NC_005261.1 + 5508 0.69 0.511706
Target:  5'- gGGCCgCGgCAGCGGcgGCgaggcCGCCggCUu -3'
miRNA:   3'- -CCGG-GCgGUCGCCuaCGa----GCGGuaGA- -5'
23760 3' -60.8 NC_005261.1 + 2776 0.69 0.511706
Target:  5'- aGGCCCGCCcccgAGgGGcUGC-CGCCggCg -3'
miRNA:   3'- -CCGGGCGG----UCgCCuACGaGCGGuaGa -5'
23760 3' -60.8 NC_005261.1 + 70470 0.69 0.502218
Target:  5'- aGCCCGCgCcGCGGGUGCgCGCgCGUg- -3'
miRNA:   3'- cCGGGCG-GuCGCCUACGaGCG-GUAga -5'
23760 3' -60.8 NC_005261.1 + 124347 0.69 0.492809
Target:  5'- cGCCUcaGUgGGCGGcauUGCUgCGCCGUCUa -3'
miRNA:   3'- cCGGG--CGgUCGCCu--ACGA-GCGGUAGA- -5'
23760 3' -60.8 NC_005261.1 + 116072 0.69 0.492809
Target:  5'- uGGCgCGCCGGUccccguGGAUGC-CGCgGUCc -3'
miRNA:   3'- -CCGgGCGGUCG------CCUACGaGCGgUAGa -5'
23760 3' -60.8 NC_005261.1 + 126073 0.69 0.483482
Target:  5'- cGCCCGCCGGCcucGGcggGCgCGcCCAUCUu -3'
miRNA:   3'- cCGGGCGGUCG---CCua-CGaGC-GGUAGA- -5'
23760 3' -60.8 NC_005261.1 + 23777 0.69 0.483482
Target:  5'- gGGCCgGCUAG-GGuggGCUCGCCGg-- -3'
miRNA:   3'- -CCGGgCGGUCgCCua-CGAGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 109532 0.7 0.456029
Target:  5'- cGCCCGCC-GCGGGccccCUCGCCAc-- -3'
miRNA:   3'- cCGGGCGGuCGCCUac--GAGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 90222 0.7 0.456029
Target:  5'- cGCCCucGCgCGGCGGGcggGCgCGCCGUCg -3'
miRNA:   3'- cCGGG--CG-GUCGCCUa--CGaGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 64513 0.7 0.447065
Target:  5'- gGGCCCGCgGGCGGcucCUCGUCGg-- -3'
miRNA:   3'- -CCGGGCGgUCGCCuacGAGCGGUaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.