miRNA display CGI


Results 81 - 100 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 3' -60.8 NC_005261.1 + 118570 0.68 0.569997
Target:  5'- uGCCCGCgCGcGCGGcgGCgcgCGCCGc-- -3'
miRNA:   3'- cCGGGCG-GU-CGCCuaCGa--GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 49922 0.68 0.57395
Target:  5'- uGGCCCGCCucgaggcgcccgcggAGCcgcgcaaaaaaGGAgGCggCGCCGUCg -3'
miRNA:   3'- -CCGGGCGG---------------UCG-----------CCUaCGa-GCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 2589 0.68 0.550339
Target:  5'- cGGCaCG-CGGCGGAaGC-CGCCGUCg -3'
miRNA:   3'- -CCGgGCgGUCGCCUaCGaGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 110011 0.68 0.540587
Target:  5'- cGCCCGCCGGC----GC-CGCCGUCc -3'
miRNA:   3'- cCGGGCGGUCGccuaCGaGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 102688 0.68 0.521266
Target:  5'- cGUCCGCC-GCGGccgucgcUGC-CGCCGUCUc -3'
miRNA:   3'- cCGGGCGGuCGCCu------ACGaGCGGUAGA- -5'
23760 3' -60.8 NC_005261.1 + 65586 0.68 0.530895
Target:  5'- uGGUCCGCgAGCuccUGCUCGCCGg-- -3'
miRNA:   3'- -CCGGGCGgUCGccuACGAGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 2415 0.68 0.530895
Target:  5'- gGGcCCCGCgCGGCGGcggGC-CGCgAUCUc -3'
miRNA:   3'- -CC-GGGCG-GUCGCCua-CGaGCGgUAGA- -5'
23760 3' -60.8 NC_005261.1 + 6255 0.68 0.530895
Target:  5'- uGCCCGCCccGCGGGgcgGCcCGCCGc-- -3'
miRNA:   3'- cCGGGCGGu-CGCCUa--CGaGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 23207 0.68 0.530895
Target:  5'- gGGCCCG-CAGCGGcgGCcgCGCgCAa-- -3'
miRNA:   3'- -CCGGGCgGUCGCCuaCGa-GCG-GUaga -5'
23760 3' -60.8 NC_005261.1 + 118063 0.68 0.530895
Target:  5'- cGGCCgCGgCAGCGGccGCagccgCGCuCGUCUg -3'
miRNA:   3'- -CCGG-GCgGUCGCCuaCGa----GCG-GUAGA- -5'
23760 3' -60.8 NC_005261.1 + 19158 0.68 0.537673
Target:  5'- cGGCCaGCCGGCGGAucacgcgaagcagcUGCcgggcgcagUCGCCuUCg -3'
miRNA:   3'- -CCGGgCGGUCGCCU--------------ACG---------AGCGGuAGa -5'
23760 3' -60.8 NC_005261.1 + 52549 0.68 0.537673
Target:  5'- gGGCCgGCUGcucuagcgacucgcGCGcGA-GCUCGCCGUCg -3'
miRNA:   3'- -CCGGgCGGU--------------CGC-CUaCGAGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 72705 0.68 0.540587
Target:  5'- aGGUCCGCCAGCGucgcGCcCGCCGc-- -3'
miRNA:   3'- -CCGGGCGGUCGCcua-CGaGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 66110 0.68 0.540587
Target:  5'- aGCCCGCgCAGCGccuUGCccaucgucagCGCCGUCa -3'
miRNA:   3'- cCGGGCG-GUCGCcu-ACGa---------GCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 73619 0.68 0.540587
Target:  5'- cGGCCCGucgucgucuuccCCAGCccGUGCgCGCCGUCc -3'
miRNA:   3'- -CCGGGC------------GGUCGccUACGaGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 109879 0.67 0.589822
Target:  5'- gGGCCCGCgGGCGGgcGC-C-CCGgggCUa -3'
miRNA:   3'- -CCGGGCGgUCGCCuaCGaGcGGUa--GA- -5'
23760 3' -60.8 NC_005261.1 + 57381 0.67 0.588827
Target:  5'- cGCCCGCCAGCagcucggGGA-GCgCGCCcgUg -3'
miRNA:   3'- cCGGGCGGUCG-------CCUaCGaGCGGuaGa -5'
23760 3' -60.8 NC_005261.1 + 59373 0.67 0.579891
Target:  5'- cGCCCGCCAGCGcccGCgccacggCGCCGa-- -3'
miRNA:   3'- cCGGGCGGUCGCcuaCGa------GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 21232 0.67 0.579891
Target:  5'- gGGCCCGUCGGCuGGcgGCUuuucagggcgUGCCGc-- -3'
miRNA:   3'- -CCGGGCGGUCG-CCuaCGA----------GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 63012 0.67 0.589822
Target:  5'- cGGCCgCGCCcgcGCGGgcGCcggCGCCcgCg -3'
miRNA:   3'- -CCGG-GCGGu--CGCCuaCGa--GCGGuaGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.