miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 3' -60.8 NC_005261.1 + 87960 0.82 0.072182
Target:  5'- cGGCCCGCCGGCGGcggGCUCGgUAUUUa -3'
miRNA:   3'- -CCGGGCGGUCGCCua-CGAGCgGUAGA- -5'
23760 3' -60.8 NC_005261.1 + 37444 0.82 0.074097
Target:  5'- gGGCUCGCCgaagauauaaGGCGGGUGCUCGCCggCa -3'
miRNA:   3'- -CCGGGCGG----------UCGCCUACGAGCGGuaGa -5'
23760 3' -60.8 NC_005261.1 + 95804 0.78 0.130715
Target:  5'- aGCCggCGCCGGCGGggGCUCGCgGUCc -3'
miRNA:   3'- cCGG--GCGGUCGCCuaCGAGCGgUAGa -5'
23760 3' -60.8 NC_005261.1 + 11939 0.77 0.155893
Target:  5'- cGGCCCGCgCcGCGGcgGCUCGCCcggCg -3'
miRNA:   3'- -CCGGGCG-GuCGCCuaCGAGCGGua-Ga -5'
23760 3' -60.8 NC_005261.1 + 106819 0.76 0.189976
Target:  5'- uGGCCCGCCAGCagcgcguGGUGCgCGUCGUCc -3'
miRNA:   3'- -CCGGGCGGUCGc------CUACGaGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 130566 0.75 0.219684
Target:  5'- cGGCCCGCCgGGCGGAaGCgcCGCCGc-- -3'
miRNA:   3'- -CCGGGCGG-UCGCCUaCGa-GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 105181 0.75 0.219684
Target:  5'- gGGCCCGCCGccgccGCGGcagGCUCGUCcgCUu -3'
miRNA:   3'- -CCGGGCGGU-----CGCCua-CGAGCGGuaGA- -5'
23760 3' -60.8 NC_005261.1 + 31299 0.75 0.229887
Target:  5'- cGGCCCGCCGccgcgcggggcccGCGGGcgcGCUCGCCGc-- -3'
miRNA:   3'- -CCGGGCGGU-------------CGCCUa--CGAGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 74809 0.75 0.235975
Target:  5'- aGGCCCGCgUGGCGGAggugGC-CGCCGUg- -3'
miRNA:   3'- -CCGGGCG-GUCGCCUa---CGaGCGGUAga -5'
23760 3' -60.8 NC_005261.1 + 13084 0.74 0.24739
Target:  5'- cGGCCCGUCGGCGGGcggcggGCUCGgC-UCg -3'
miRNA:   3'- -CCGGGCGGUCGCCUa-----CGAGCgGuAGa -5'
23760 3' -60.8 NC_005261.1 + 93689 0.74 0.24739
Target:  5'- cGGCggggCGCCGGCGGGUGCcucuuccuccUCGUCGUCg -3'
miRNA:   3'- -CCGg---GCGGUCGCCUACG----------AGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 38601 0.74 0.259258
Target:  5'- cGGCCCGCggcuGGCGGGUGUUgGCCGc-- -3'
miRNA:   3'- -CCGGGCGg---UCGCCUACGAgCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 1285 0.74 0.259258
Target:  5'- cGCCCagGCCGGCGGG-GCUC-CCGUCg -3'
miRNA:   3'- cCGGG--CGGUCGCCUaCGAGcGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 12785 0.74 0.265365
Target:  5'- gGGCUCGUCGGCGa--GCUCGUCGUCg -3'
miRNA:   3'- -CCGGGCGGUCGCcuaCGAGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 98316 0.73 0.277926
Target:  5'- gGGCgccgCCGCCAGCGGcgGCgCGCCccguGUCg -3'
miRNA:   3'- -CCG----GGCGGUCGCCuaCGaGCGG----UAGa -5'
23760 3' -60.8 NC_005261.1 + 30315 0.73 0.277926
Target:  5'- aGCCCGCCGGCGGAagUGCcggCGCgG-CUg -3'
miRNA:   3'- cCGGGCGGUCGCCU--ACGa--GCGgUaGA- -5'
23760 3' -60.8 NC_005261.1 + 59023 0.73 0.284383
Target:  5'- cGGCgCCGCCAGgaaCGGGUGC-CGCCGc-- -3'
miRNA:   3'- -CCG-GGCGGUC---GCCUACGaGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 5132 0.73 0.290958
Target:  5'- cGGCCCGCCGGCGcucGCgCGCC-UCg -3'
miRNA:   3'- -CCGGGCGGUCGCcuaCGaGCGGuAGa -5'
23760 3' -60.8 NC_005261.1 + 106769 0.73 0.297651
Target:  5'- aGCuuGCCGGCGGccaGCccagCGCCGUCUg -3'
miRNA:   3'- cCGggCGGUCGCCua-CGa---GCGGUAGA- -5'
23760 3' -60.8 NC_005261.1 + 103817 0.73 0.304462
Target:  5'- cGCCCGCCGccagcagcucGCGGAggaGCUCGCCcUUg -3'
miRNA:   3'- cCGGGCGGU----------CGCCUa--CGAGCGGuAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.