miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 3' -60.8 NC_005261.1 + 118162 0.73 0.304462
Target:  5'- uGGCCguCG-CGGCGGG-GCUUGCCGUCUg -3'
miRNA:   3'- -CCGG--GCgGUCGCCUaCGAGCGGUAGA- -5'
23760 3' -60.8 NC_005261.1 + 123411 0.73 0.311393
Target:  5'- uGCCgGCCAGgGGcggGCUCGCCAc-- -3'
miRNA:   3'- cCGGgCGGUCgCCua-CGAGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 4454 0.72 0.318443
Target:  5'- gGGCCCuCCAGCGGcgGCggcCCGUCg -3'
miRNA:   3'- -CCGGGcGGUCGCCuaCGagcGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 23704 0.72 0.32489
Target:  5'- aGGCCCGCCcggucggguggcaAGCGGGUGgCcgCGCCGa-- -3'
miRNA:   3'- -CCGGGCGG-------------UCGCCUAC-Ga-GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 95382 0.72 0.325613
Target:  5'- cGGCCCcCCGGCGcGccGCUCgcgGCCAUCa -3'
miRNA:   3'- -CCGGGcGGUCGC-CuaCGAG---CGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 119276 0.72 0.325613
Target:  5'- uGCUCGCUgGGCGGggGCUCGCCGa-- -3'
miRNA:   3'- cCGGGCGG-UCGCCuaCGAGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 75072 0.72 0.332167
Target:  5'- cGCgCGCCGGCGGggGCUCGgcgggcaUCGUCUu -3'
miRNA:   3'- cCGgGCGGUCGCCuaCGAGC-------GGUAGA- -5'
23760 3' -60.8 NC_005261.1 + 134099 0.72 0.340309
Target:  5'- cGGCgCGCCGGCGcgcGCUCGCCGc-- -3'
miRNA:   3'- -CCGgGCGGUCGCcuaCGAGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 90388 0.72 0.347835
Target:  5'- aGGcCCCGCCGGCGGG-GCUggCGCCcggCg -3'
miRNA:   3'- -CC-GGGCGGUCGCCUaCGA--GCGGua-Ga -5'
23760 3' -60.8 NC_005261.1 + 135065 0.72 0.35471
Target:  5'- cGGCCCGCCgcuuuccGGCGGcggGCUCGCgGc-- -3'
miRNA:   3'- -CCGGGCGG-------UCGCCua-CGAGCGgUaga -5'
23760 3' -60.8 NC_005261.1 + 102548 0.72 0.35548
Target:  5'- cGGCCCcaggcgcCCGGCGGAcaccGcCUCGCCGUCc -3'
miRNA:   3'- -CCGGGc------GGUCGCCUa---C-GAGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 97162 0.72 0.35548
Target:  5'- cGGCCCgGCCGGCuGGGUcGCgggCGCCGg-- -3'
miRNA:   3'- -CCGGG-CGGUCG-CCUA-CGa--GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 86499 0.72 0.35548
Target:  5'- cGCCUGUCuGCGGcagggGCUUGCCGUCc -3'
miRNA:   3'- cCGGGCGGuCGCCua---CGAGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 126457 0.71 0.37112
Target:  5'- aGCCgCGCCAGCGc--GCUCGCC-UCg -3'
miRNA:   3'- cCGG-GCGGUCGCcuaCGAGCGGuAGa -5'
23760 3' -60.8 NC_005261.1 + 19875 0.71 0.37112
Target:  5'- -cCCCGCCGGCGGGcccGUcgucgccccagUCGCCGUCg -3'
miRNA:   3'- ccGGGCGGUCGCCUa--CG-----------AGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 99097 0.71 0.387224
Target:  5'- cGGCgCG-CAGCGGcuUGCUCGCgAUCa -3'
miRNA:   3'- -CCGgGCgGUCGCCu-ACGAGCGgUAGa -5'
23760 3' -60.8 NC_005261.1 + 37354 0.71 0.395446
Target:  5'- -aUCCGCgGGCGG-UGCUCGCCGc-- -3'
miRNA:   3'- ccGGGCGgUCGCCuACGAGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 113132 0.71 0.403781
Target:  5'- cGCCCGCCGcGCGGcgGCugaacguggagaUCGCCGa-- -3'
miRNA:   3'- cCGGGCGGU-CGCCuaCG------------AGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 109335 0.7 0.412225
Target:  5'- cGGCCgcgggGUCGGCGGccGCgUCGCCGUCc -3'
miRNA:   3'- -CCGGg----CGGUCGCCuaCG-AGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 128804 0.7 0.412225
Target:  5'- gGGCCCG-CGGCGGG-GCUCGCg---- -3'
miRNA:   3'- -CCGGGCgGUCGCCUaCGAGCGguaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.