miRNA display CGI


Results 41 - 60 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 3' -60.8 NC_005261.1 + 39483 0.7 0.412225
Target:  5'- gGGCCCGCC-GCGGAcgaUGaUCGCCccUCg -3'
miRNA:   3'- -CCGGGCGGuCGCCU---ACgAGCGGu-AGa -5'
23760 3' -60.8 NC_005261.1 + 72232 0.7 0.420778
Target:  5'- cGCCgGCCGGCGG-UGCgCGCaaaGUCg -3'
miRNA:   3'- cCGGgCGGUCGCCuACGaGCGg--UAGa -5'
23760 3' -60.8 NC_005261.1 + 112464 0.7 0.428567
Target:  5'- gGGCCgUGCUAaacaugcGCGGcAUGCUCGCCcgCg -3'
miRNA:   3'- -CCGG-GCGGU-------CGCC-UACGAGCGGuaGa -5'
23760 3' -60.8 NC_005261.1 + 21830 0.7 0.429437
Target:  5'- gGGCgCGCguGCGGGcggGCUCGCCccgCa -3'
miRNA:   3'- -CCGgGCGguCGCCUa--CGAGCGGua-Ga -5'
23760 3' -60.8 NC_005261.1 + 118101 0.7 0.429437
Target:  5'- cGGCCCGCCGcGCaGAcGCUgCGCCGc-- -3'
miRNA:   3'- -CCGGGCGGU-CGcCUaCGA-GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 68754 0.7 0.446175
Target:  5'- cGCCCGCCGgggcgccGCGGA-GC-CGCCGUg- -3'
miRNA:   3'- cCGGGCGGU-------CGCCUaCGaGCGGUAga -5'
23760 3' -60.8 NC_005261.1 + 64513 0.7 0.447065
Target:  5'- gGGCCCGCgGGCGGcucCUCGUCGg-- -3'
miRNA:   3'- -CCGGGCGgUCGCCuacGAGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 59871 0.7 0.447065
Target:  5'- cGGCCUcguacggguGCCGGCGGGcagcaGCUCGUCGUa- -3'
miRNA:   3'- -CCGGG---------CGGUCGCCUa----CGAGCGGUAga -5'
23760 3' -60.8 NC_005261.1 + 6180 0.7 0.447065
Target:  5'- aGGCCCGCCuaggugcgagGGCGGGcccaGCUgGCCcgCc -3'
miRNA:   3'- -CCGGGCGG----------UCGCCUa---CGAgCGGuaGa -5'
23760 3' -60.8 NC_005261.1 + 90222 0.7 0.456029
Target:  5'- cGCCCucGCgCGGCGGGcggGCgCGCCGUCg -3'
miRNA:   3'- cCGGG--CG-GUCGCCUa--CGaGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 109532 0.7 0.456029
Target:  5'- cGCCCGCC-GCGGGccccCUCGCCAc-- -3'
miRNA:   3'- cCGGGCGGuCGCCUac--GAGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 117995 0.69 0.465089
Target:  5'- cGGCCUGaCGGCGGcgGCgcuggaCGCUGUCg -3'
miRNA:   3'- -CCGGGCgGUCGCCuaCGa-----GCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 59575 0.69 0.465089
Target:  5'- cGCgCGCCgcAGCGGGUGCcgCGCCGc-- -3'
miRNA:   3'- cCGgGCGG--UCGCCUACGa-GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 59494 0.69 0.465089
Target:  5'- cGCCgCGCCAGCGGcgGCggUCGCacgCg -3'
miRNA:   3'- cCGG-GCGGUCGCCuaCG--AGCGguaGa -5'
23760 3' -60.8 NC_005261.1 + 47268 0.69 0.465089
Target:  5'- cGGCCCGCCGGCGaaGAgcgccGCgUGCCA-CUg -3'
miRNA:   3'- -CCGGGCGGUCGC--CUa----CGaGCGGUaGA- -5'
23760 3' -60.8 NC_005261.1 + 46353 0.69 0.465089
Target:  5'- cGGUCCGgCAGgGGAacccgacgaagUGCUCGCUcUCg -3'
miRNA:   3'- -CCGGGCgGUCgCCU-----------ACGAGCGGuAGa -5'
23760 3' -60.8 NC_005261.1 + 29801 0.69 0.474241
Target:  5'- aGGCCggCGCCGGCGGc-GCgggCGCCcgCg -3'
miRNA:   3'- -CCGG--GCGGUCGCCuaCGa--GCGGuaGa -5'
23760 3' -60.8 NC_005261.1 + 12653 0.69 0.474241
Target:  5'- gGGCCgCGCCGGCGcGAca-UCGUCGUCc -3'
miRNA:   3'- -CCGG-GCGGUCGC-CUacgAGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 4077 0.69 0.474241
Target:  5'- -cCCCGaCCGGCGGcaGCggCGCCGUCa -3'
miRNA:   3'- ccGGGC-GGUCGCCuaCGa-GCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 43421 0.69 0.474241
Target:  5'- cGGCcuccgCCGCCGGCGGGgagcugGCUCGgCGcCUg -3'
miRNA:   3'- -CCG-----GGCGGUCGCCUa-----CGAGCgGUaGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.