miRNA display CGI


Results 61 - 80 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 3' -60.8 NC_005261.1 + 126073 0.69 0.483482
Target:  5'- cGCCCGCCGGCcucGGcggGCgCGcCCAUCUu -3'
miRNA:   3'- cCGGGCGGUCG---CCua-CGaGC-GGUAGA- -5'
23760 3' -60.8 NC_005261.1 + 23834 0.69 0.483482
Target:  5'- gGGCCgGCUAG-GGuggGCUCGCCGg-- -3'
miRNA:   3'- -CCGGgCGGUCgCCua-CGAGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 23777 0.69 0.483482
Target:  5'- gGGCCgGCUAG-GGuggGCUCGCCGg-- -3'
miRNA:   3'- -CCGGgCGGUCgCCua-CGAGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 116072 0.69 0.492809
Target:  5'- uGGCgCGCCGGUccccguGGAUGC-CGCgGUCc -3'
miRNA:   3'- -CCGgGCGGUCG------CCUACGaGCGgUAGa -5'
23760 3' -60.8 NC_005261.1 + 124347 0.69 0.492809
Target:  5'- cGCCUcaGUgGGCGGcauUGCUgCGCCGUCUa -3'
miRNA:   3'- cCGGG--CGgUCGCCu--ACGA-GCGGUAGA- -5'
23760 3' -60.8 NC_005261.1 + 70470 0.69 0.502218
Target:  5'- aGCCCGCgCcGCGGGUGCgCGCgCGUg- -3'
miRNA:   3'- cCGGGCG-GuCGCCUACGaGCG-GUAga -5'
23760 3' -60.8 NC_005261.1 + 2776 0.69 0.511706
Target:  5'- aGGCCCGCCcccgAGgGGcUGC-CGCCggCg -3'
miRNA:   3'- -CCGGGCGG----UCgCCuACGaGCGGuaGa -5'
23760 3' -60.8 NC_005261.1 + 5508 0.69 0.511706
Target:  5'- gGGCCgCGgCAGCGGcgGCgaggcCGCCggCUu -3'
miRNA:   3'- -CCGG-GCgGUCGCCuaCGa----GCGGuaGA- -5'
23760 3' -60.8 NC_005261.1 + 85358 0.69 0.511706
Target:  5'- cGGCCCGCUga-GGAUGUUCGCgCcgCc -3'
miRNA:   3'- -CCGGGCGGucgCCUACGAGCG-GuaGa -5'
23760 3' -60.8 NC_005261.1 + 117723 0.69 0.511706
Target:  5'- gGGCCCGCaAGCGGccGCgcgcuggCGCCGc-- -3'
miRNA:   3'- -CCGGGCGgUCGCCuaCGa------GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 127276 0.69 0.511706
Target:  5'- gGGCCCGCCcgccGCGGggGCa-GCCcUCc -3'
miRNA:   3'- -CCGGGCGGu---CGCCuaCGagCGGuAGa -5'
23760 3' -60.8 NC_005261.1 + 102688 0.68 0.521266
Target:  5'- cGUCCGCC-GCGGccgucgcUGC-CGCCGUCUc -3'
miRNA:   3'- cCGGGCGGuCGCCu------ACGaGCGGUAGA- -5'
23760 3' -60.8 NC_005261.1 + 65586 0.68 0.530895
Target:  5'- uGGUCCGCgAGCuccUGCUCGCCGg-- -3'
miRNA:   3'- -CCGGGCGgUCGccuACGAGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 2415 0.68 0.530895
Target:  5'- gGGcCCCGCgCGGCGGcggGC-CGCgAUCUc -3'
miRNA:   3'- -CC-GGGCG-GUCGCCua-CGaGCGgUAGA- -5'
23760 3' -60.8 NC_005261.1 + 6255 0.68 0.530895
Target:  5'- uGCCCGCCccGCGGGgcgGCcCGCCGc-- -3'
miRNA:   3'- cCGGGCGGu-CGCCUa--CGaGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 23207 0.68 0.530895
Target:  5'- gGGCCCG-CAGCGGcgGCcgCGCgCAa-- -3'
miRNA:   3'- -CCGGGCgGUCGCCuaCGa-GCG-GUaga -5'
23760 3' -60.8 NC_005261.1 + 118063 0.68 0.530895
Target:  5'- cGGCCgCGgCAGCGGccGCagccgCGCuCGUCUg -3'
miRNA:   3'- -CCGG-GCgGUCGCCuaCGa----GCG-GUAGA- -5'
23760 3' -60.8 NC_005261.1 + 19158 0.68 0.537673
Target:  5'- cGGCCaGCCGGCGGAucacgcgaagcagcUGCcgggcgcagUCGCCuUCg -3'
miRNA:   3'- -CCGGgCGGUCGCCU--------------ACG---------AGCGGuAGa -5'
23760 3' -60.8 NC_005261.1 + 52549 0.68 0.537673
Target:  5'- gGGCCgGCUGcucuagcgacucgcGCGcGA-GCUCGCCGUCg -3'
miRNA:   3'- -CCGGgCGGU--------------CGC-CUaCGAGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 66110 0.68 0.540587
Target:  5'- aGCCCGCgCAGCGccuUGCccaucgucagCGCCGUCa -3'
miRNA:   3'- cCGGGCG-GUCGCcu-ACGa---------GCGGUAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.