miRNA display CGI


Results 81 - 100 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 3' -60.8 NC_005261.1 + 73619 0.68 0.540587
Target:  5'- cGGCCCGucgucgucuuccCCAGCccGUGCgCGCCGUCc -3'
miRNA:   3'- -CCGGGC------------GGUCGccUACGaGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 66110 0.68 0.540587
Target:  5'- aGCCCGCgCAGCGccuUGCccaucgucagCGCCGUCa -3'
miRNA:   3'- cCGGGCG-GUCGCcu-ACGa---------GCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 72705 0.68 0.540587
Target:  5'- aGGUCCGCCAGCGucgcGCcCGCCGc-- -3'
miRNA:   3'- -CCGGGCGGUCGCcua-CGaGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 2589 0.68 0.550339
Target:  5'- cGGCaCG-CGGCGGAaGC-CGCCGUCg -3'
miRNA:   3'- -CCGgGCgGUCGCCUaCGaGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 16281 0.68 0.550339
Target:  5'- cGGCUCGCC--CGGggGggCGCCGUCg -3'
miRNA:   3'- -CCGGGCGGucGCCuaCgaGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 76522 0.68 0.550339
Target:  5'- uGCCCGUCuacgugGGCGGGUacCUCGCCcUCUa -3'
miRNA:   3'- cCGGGCGG------UCGCCUAc-GAGCGGuAGA- -5'
23760 3' -60.8 NC_005261.1 + 98606 0.68 0.550339
Target:  5'- cGCCCGCaaaaucCGGCGGGuaUGCgUCGCCGa-- -3'
miRNA:   3'- cCGGGCG------GUCGCCU--ACG-AGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 5909 0.68 0.560144
Target:  5'- cGGCCgGCCGGCuGGcuaGCUCGCUc--- -3'
miRNA:   3'- -CCGGgCGGUCG-CCua-CGAGCGGuaga -5'
23760 3' -60.8 NC_005261.1 + 101289 0.68 0.560144
Target:  5'- gGGCCCGCgGucGUcGAUGCgCGCCGUUa -3'
miRNA:   3'- -CCGGGCGgU--CGcCUACGaGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 67607 0.68 0.560144
Target:  5'- aGCCCGaaGGCGGAcGCcgCGCCAa-- -3'
miRNA:   3'- cCGGGCggUCGCCUaCGa-GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 15780 0.68 0.569997
Target:  5'- aGG-CCGCUGGCGGgcGC-CGCCcgCg -3'
miRNA:   3'- -CCgGGCGGUCGCCuaCGaGCGGuaGa -5'
23760 3' -60.8 NC_005261.1 + 50120 0.68 0.569997
Target:  5'- aGGgCCGCCAGCaGGuccacaagcuGUGCguugGCCGUCg -3'
miRNA:   3'- -CCgGGCGGUCG-CC----------UACGag--CGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 38678 0.68 0.569997
Target:  5'- gGGCCCGCCAGUcucgcGCUgGCCGg-- -3'
miRNA:   3'- -CCGGGCGGUCGccua-CGAgCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 118570 0.68 0.569997
Target:  5'- uGCCCGCgCGcGCGGcgGCgcgCGCCGc-- -3'
miRNA:   3'- cCGGGCG-GU-CGCCuaCGa--GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 49922 0.68 0.57395
Target:  5'- uGGCCCGCCucgaggcgcccgcggAGCcgcgcaaaaaaGGAgGCggCGCCGUCg -3'
miRNA:   3'- -CCGGGCGG---------------UCG-----------CCUaCGa-GCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 16729 0.67 0.5789
Target:  5'- uGGCCCucggcgaGCCGcGCGGgcGC-CGCCAUg- -3'
miRNA:   3'- -CCGGG-------CGGU-CGCCuaCGaGCGGUAga -5'
23760 3' -60.8 NC_005261.1 + 21232 0.67 0.579891
Target:  5'- gGGCCCGUCGGCuGGcgGCUuuucagggcgUGCCGc-- -3'
miRNA:   3'- -CCGGGCGGUCG-CCuaCGA----------GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 59373 0.67 0.579891
Target:  5'- cGCCCGCCAGCGcccGCgccacggCGCCGa-- -3'
miRNA:   3'- cCGGGCGGUCGCcuaCGa------GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 57381 0.67 0.588827
Target:  5'- cGCCCGCCAGCagcucggGGA-GCgCGCCcgUg -3'
miRNA:   3'- cCGGGCGGUCG-------CCUaCGaGCGGuaGa -5'
23760 3' -60.8 NC_005261.1 + 63012 0.67 0.589822
Target:  5'- cGGCCgCGCCcgcGCGGgcGCcggCGCCcgCg -3'
miRNA:   3'- -CCGG-GCGGu--CGCCuaCGa--GCGGuaGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.