miRNA display CGI


Results 101 - 120 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 3' -60.8 NC_005261.1 + 63012 0.67 0.589822
Target:  5'- cGGCCgCGCCcgcGCGGgcGCcggCGCCcgCg -3'
miRNA:   3'- -CCGG-GCGGu--CGCCuaCGa--GCGGuaGa -5'
23760 3' -60.8 NC_005261.1 + 109879 0.67 0.589822
Target:  5'- gGGCCCGCgGGCGGgcGC-C-CCGgggCUa -3'
miRNA:   3'- -CCGGGCGgUCGCCuaCGaGcGGUa--GA- -5'
23760 3' -60.8 NC_005261.1 + 102162 0.67 0.599782
Target:  5'- aGCUgCGCCAGCGGcgGCg-GCaCGUCg -3'
miRNA:   3'- cCGG-GCGGUCGCCuaCGagCG-GUAGa -5'
23760 3' -60.8 NC_005261.1 + 29308 0.67 0.599782
Target:  5'- uGGCCCGgCAGCGcGccGC-CGCCGc-- -3'
miRNA:   3'- -CCGGGCgGUCGC-CuaCGaGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 121829 0.67 0.599782
Target:  5'- cGGgCCGCC-GCGGcgGCgcaccggCGCCAg-- -3'
miRNA:   3'- -CCgGGCGGuCGCCuaCGa------GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 91483 0.67 0.599782
Target:  5'- cGGCgCCGCC-GCGGccGC-CGCCcgCc -3'
miRNA:   3'- -CCG-GGCGGuCGCCuaCGaGCGGuaGa -5'
23760 3' -60.8 NC_005261.1 + 61646 0.67 0.609764
Target:  5'- cGUCCGCCGGCGGAcUGa--GCCGa-- -3'
miRNA:   3'- cCGGGCGGUCGCCU-ACgagCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 4665 0.67 0.609764
Target:  5'- cGGCCgCGgCGGCGGcgGCccccgUGUCAUCc -3'
miRNA:   3'- -CCGG-GCgGUCGCCuaCGa----GCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 137790 0.67 0.609764
Target:  5'- gGGCCCcgccgcccgcGCCGGCGccgccccuGGUGCUCGCgGggCUg -3'
miRNA:   3'- -CCGGG----------CGGUCGC--------CUACGAGCGgUa-GA- -5'
23760 3' -60.8 NC_005261.1 + 107 0.67 0.609764
Target:  5'- gGGCCCcgccgcccgcGCCGGCGccgccccuGGUGCUCGCgGggCUg -3'
miRNA:   3'- -CCGGG----------CGGUCGC--------CUACGAGCGgUa-GA- -5'
23760 3' -60.8 NC_005261.1 + 132610 0.67 0.619763
Target:  5'- cGGCgagCCGCCAGgGGgcGCUggCGCCGa-- -3'
miRNA:   3'- -CCG---GGCGGUCgCCuaCGA--GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 102285 0.67 0.619763
Target:  5'- uGCCgCGCCAGCGGccGCggGUCGUa- -3'
miRNA:   3'- cCGG-GCGGUCGCCuaCGagCGGUAga -5'
23760 3' -60.8 NC_005261.1 + 95727 0.67 0.619763
Target:  5'- gGGCCCGCCgcgcucAGCGGc-GC-CGCCGc-- -3'
miRNA:   3'- -CCGGGCGG------UCGCCuaCGaGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 68861 0.67 0.619763
Target:  5'- cGCCCucuGCC-GCGGcUGUgCGCCGUCg -3'
miRNA:   3'- cCGGG---CGGuCGCCuACGaGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 47459 0.67 0.619763
Target:  5'- cGGCCCGCUugcGCGGggGCUgGgCGa-- -3'
miRNA:   3'- -CCGGGCGGu--CGCCuaCGAgCgGUaga -5'
23760 3' -60.8 NC_005261.1 + 1077 0.67 0.619763
Target:  5'- uGGCCCcgcuCCAGgGcGAgcccgGCUCGUCGUCc -3'
miRNA:   3'- -CCGGGc---GGUCgC-CUa----CGAGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 80660 0.67 0.629771
Target:  5'- uGGUgUGCUcGCGG-UGCgCGCCGUCg -3'
miRNA:   3'- -CCGgGCGGuCGCCuACGaGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 109811 0.67 0.629771
Target:  5'- cGGCgCCGCUuccgccGCGGcgGC-CGCCGaaUCUg -3'
miRNA:   3'- -CCG-GGCGGu-----CGCCuaCGaGCGGU--AGA- -5'
23760 3' -60.8 NC_005261.1 + 66062 0.67 0.633775
Target:  5'- gGGCCCGCgguccccuccagcccCAGCaGAUGCgcggccaCGUCAUCc -3'
miRNA:   3'- -CCGGGCG---------------GUCGcCUACGa------GCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 43182 0.66 0.638779
Target:  5'- cGGCgCCGCCGGCGaggcagaggugguGcgGCUCGCgGa-- -3'
miRNA:   3'- -CCG-GGCGGUCGC-------------CuaCGAGCGgUaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.