miRNA display CGI


Results 21 - 40 of 168 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 3' -60.8 NC_005261.1 + 74981 0.66 0.669743
Target:  5'- cGCCCGCgc-CGGGUGCagaUCGCCAa-- -3'
miRNA:   3'- cCGGGCGgucGCCUACG---AGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 49171 0.66 0.669743
Target:  5'- cGGCCa--CGGCgGGGUGCUCgGCCAg-- -3'
miRNA:   3'- -CCGGgcgGUCG-CCUACGAG-CGGUaga -5'
23760 3' -60.8 NC_005261.1 + 36958 0.66 0.669743
Target:  5'- aGGCCCGCCGcGCGGcgcagagcucgGUGCgggcuccaGCCGg-- -3'
miRNA:   3'- -CCGGGCGGU-CGCC-----------UACGag------CGGUaga -5'
23760 3' -60.8 NC_005261.1 + 78887 0.66 0.669743
Target:  5'- cGGUUCGCCAGCaGcgGCcCGCCcUUg -3'
miRNA:   3'- -CCGGGCGGUCGcCuaCGaGCGGuAGa -5'
23760 3' -60.8 NC_005261.1 + 99783 0.66 0.669743
Target:  5'- cGGCCCGggucCCAgucgcggcGCGGAUgGCgaacagcgCGCCGUCc -3'
miRNA:   3'- -CCGGGC----GGU--------CGCCUA-CGa-------GCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 123921 0.66 0.659774
Target:  5'- cGGCCCG--AGCaGGUGCgCGCCcgCUa -3'
miRNA:   3'- -CCGGGCggUCGcCUACGaGCGGuaGA- -5'
23760 3' -60.8 NC_005261.1 + 50511 0.66 0.659774
Target:  5'- cGCCCaGCCAGCGcagcaggGC-CGUCGUCUu -3'
miRNA:   3'- cCGGG-CGGUCGCcua----CGaGCGGUAGA- -5'
23760 3' -60.8 NC_005261.1 + 43570 0.66 0.659774
Target:  5'- -uUCCGCgAGCGGcgcuucgccGUGCgcgaCGCCGUCUc -3'
miRNA:   3'- ccGGGCGgUCGCC---------UACGa---GCGGUAGA- -5'
23760 3' -60.8 NC_005261.1 + 106270 0.66 0.659774
Target:  5'- cGCugCCGCCgGGCGGcccGUGCaaaCGCCGUCg -3'
miRNA:   3'- cCG--GGCGG-UCGCC---UACGa--GCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 101467 0.66 0.659774
Target:  5'- aGCgCCGCCGGCGGcgGCgugaugCGCag-Ca -3'
miRNA:   3'- cCG-GGCGGUCGCCuaCGa-----GCGguaGa -5'
23760 3' -60.8 NC_005261.1 + 29834 0.66 0.659774
Target:  5'- cGCUCGCCGagcuGCGcGccGUGCUCGCCGg-- -3'
miRNA:   3'- cCGGGCGGU----CGC-C--UACGAGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 134357 0.66 0.659774
Target:  5'- cGCgCCGCCGcGCGGGggGCggCGCCG-CUg -3'
miRNA:   3'- cCG-GGCGGU-CGCCUa-CGa-GCGGUaGA- -5'
23760 3' -60.8 NC_005261.1 + 10524 0.66 0.659774
Target:  5'- gGGCCC-CgCGGCGc--GCUCGCUGUCg -3'
miRNA:   3'- -CCGGGcG-GUCGCcuaCGAGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 59720 0.66 0.658776
Target:  5'- cGCCCGCCgggcggcAGCGGcgGCgcgcggcCGCCcUCc -3'
miRNA:   3'- cCGGGCGG-------UCGCCuaCGa------GCGGuAGa -5'
23760 3' -60.8 NC_005261.1 + 182 0.66 0.656779
Target:  5'- cGCCCcuggugcucccgggGCCAGCGG-UGC-CGCCGc-- -3'
miRNA:   3'- cCGGG--------------CGGUCGCCuACGaGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 137865 0.66 0.656779
Target:  5'- cGCCCcuggugcucccgggGCCAGCGG-UGC-CGCCGc-- -3'
miRNA:   3'- cCGGG--------------CGGUCGCCuACGaGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 59338 0.66 0.649784
Target:  5'- cGCCCGCC---GGGUcGC-CGCCGUCg -3'
miRNA:   3'- cCGGGCGGucgCCUA-CGaGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 58229 0.66 0.649784
Target:  5'- cGCCCGCggCGGCGGGgucCUCgGCCAUg- -3'
miRNA:   3'- cCGGGCG--GUCGCCUac-GAG-CGGUAga -5'
23760 3' -60.8 NC_005261.1 + 127723 0.66 0.649784
Target:  5'- uGGCCUGCCugguAGCGGGaGCUUGgCggCg -3'
miRNA:   3'- -CCGGGCGG----UCGCCUaCGAGCgGuaGa -5'
23760 3' -60.8 NC_005261.1 + 122817 0.66 0.649784
Target:  5'- cGCCCGCCAGCacccgcgcUGCggCGCgGUCa -3'
miRNA:   3'- cCGGGCGGUCGccu-----ACGa-GCGgUAGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.