Results 41 - 60 of 168 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23760 | 3' | -60.8 | NC_005261.1 | + | 58229 | 0.66 | 0.649784 |
Target: 5'- cGCCCGCggCGGCGGGgucCUCgGCCAUg- -3' miRNA: 3'- cCGGGCG--GUCGCCUac-GAG-CGGUAga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 118386 | 0.66 | 0.649784 |
Target: 5'- cGGCCCgaggcGCUGGCGGccGCgggCGCCGc-- -3' miRNA: 3'- -CCGGG-----CGGUCGCCuaCGa--GCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 99624 | 0.66 | 0.649784 |
Target: 5'- aGCgCCGCCAGCaggucgcccgGGAUGCacaugcgCGCCAg-- -3' miRNA: 3'- cCG-GGCGGUCG----------CCUACGa------GCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 107200 | 0.66 | 0.63978 |
Target: 5'- aGCCgCGCgaaGGCGGcgugcauguacAUGCUCGCCAg-- -3' miRNA: 3'- cCGG-GCGg--UCGCC-----------UACGAGCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 31983 | 0.66 | 0.63978 |
Target: 5'- gGGCCCGCgCAccGCGGugcccGUGC-CGCCGc-- -3' miRNA: 3'- -CCGGGCG-GU--CGCC-----UACGaGCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 14443 | 0.66 | 0.63978 |
Target: 5'- cGGCUCGCUcgcggggcgcgcGGCGGA-GCUCGCg---- -3' miRNA: 3'- -CCGGGCGG------------UCGCCUaCGAGCGguaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 46799 | 0.66 | 0.63978 |
Target: 5'- cGCCCGUCGcggcgcgcGCGGAUgGCgcgCGCCAg-- -3' miRNA: 3'- cCGGGCGGU--------CGCCUA-CGa--GCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 13949 | 0.66 | 0.63978 |
Target: 5'- cGGCCCaGCCGcGCGGAaacgCGCgGUCa -3' miRNA: 3'- -CCGGG-CGGU-CGCCUacgaGCGgUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 43182 | 0.66 | 0.638779 |
Target: 5'- cGGCgCCGCCGGCGaggcagaggugguGcgGCUCGCgGa-- -3' miRNA: 3'- -CCG-GGCGGUCGC-------------CuaCGAGCGgUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 66062 | 0.67 | 0.633775 |
Target: 5'- gGGCCCGCgguccccuccagcccCAGCaGAUGCgcggccaCGUCAUCc -3' miRNA: 3'- -CCGGGCG---------------GUCGcCUACGa------GCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 80660 | 0.67 | 0.629771 |
Target: 5'- uGGUgUGCUcGCGG-UGCgCGCCGUCg -3' miRNA: 3'- -CCGgGCGGuCGCCuACGaGCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 109811 | 0.67 | 0.629771 |
Target: 5'- cGGCgCCGCUuccgccGCGGcgGC-CGCCGaaUCUg -3' miRNA: 3'- -CCG-GGCGGu-----CGCCuaCGaGCGGU--AGA- -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 47459 | 0.67 | 0.619763 |
Target: 5'- cGGCCCGCUugcGCGGggGCUgGgCGa-- -3' miRNA: 3'- -CCGGGCGGu--CGCCuaCGAgCgGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 68861 | 0.67 | 0.619763 |
Target: 5'- cGCCCucuGCC-GCGGcUGUgCGCCGUCg -3' miRNA: 3'- cCGGG---CGGuCGCCuACGaGCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 1077 | 0.67 | 0.619763 |
Target: 5'- uGGCCCcgcuCCAGgGcGAgcccgGCUCGUCGUCc -3' miRNA: 3'- -CCGGGc---GGUCgC-CUa----CGAGCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 102285 | 0.67 | 0.619763 |
Target: 5'- uGCCgCGCCAGCGGccGCggGUCGUa- -3' miRNA: 3'- cCGG-GCGGUCGCCuaCGagCGGUAga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 132610 | 0.67 | 0.619763 |
Target: 5'- cGGCgagCCGCCAGgGGgcGCUggCGCCGa-- -3' miRNA: 3'- -CCG---GGCGGUCgCCuaCGA--GCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 95727 | 0.67 | 0.619763 |
Target: 5'- gGGCCCGCCgcgcucAGCGGc-GC-CGCCGc-- -3' miRNA: 3'- -CCGGGCGG------UCGCCuaCGaGCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 61646 | 0.67 | 0.609764 |
Target: 5'- cGUCCGCCGGCGGAcUGa--GCCGa-- -3' miRNA: 3'- cCGGGCGGUCGCCU-ACgagCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 4665 | 0.67 | 0.609764 |
Target: 5'- cGGCCgCGgCGGCGGcgGCccccgUGUCAUCc -3' miRNA: 3'- -CCGG-GCgGUCGCCuaCGa----GCGGUAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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