Results 61 - 80 of 168 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23760 | 3' | -60.8 | NC_005261.1 | + | 137790 | 0.67 | 0.609764 |
Target: 5'- gGGCCCcgccgcccgcGCCGGCGccgccccuGGUGCUCGCgGggCUg -3' miRNA: 3'- -CCGGG----------CGGUCGC--------CUACGAGCGgUa-GA- -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 107 | 0.67 | 0.609764 |
Target: 5'- gGGCCCcgccgcccgcGCCGGCGccgccccuGGUGCUCGCgGggCUg -3' miRNA: 3'- -CCGGG----------CGGUCGC--------CUACGAGCGgUa-GA- -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 102162 | 0.67 | 0.599782 |
Target: 5'- aGCUgCGCCAGCGGcgGCg-GCaCGUCg -3' miRNA: 3'- cCGG-GCGGUCGCCuaCGagCG-GUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 29308 | 0.67 | 0.599782 |
Target: 5'- uGGCCCGgCAGCGcGccGC-CGCCGc-- -3' miRNA: 3'- -CCGGGCgGUCGC-CuaCGaGCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 121829 | 0.67 | 0.599782 |
Target: 5'- cGGgCCGCC-GCGGcgGCgcaccggCGCCAg-- -3' miRNA: 3'- -CCgGGCGGuCGCCuaCGa------GCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 91483 | 0.67 | 0.599782 |
Target: 5'- cGGCgCCGCC-GCGGccGC-CGCCcgCc -3' miRNA: 3'- -CCG-GGCGGuCGCCuaCGaGCGGuaGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 63012 | 0.67 | 0.589822 |
Target: 5'- cGGCCgCGCCcgcGCGGgcGCcggCGCCcgCg -3' miRNA: 3'- -CCGG-GCGGu--CGCCuaCGa--GCGGuaGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 109879 | 0.67 | 0.589822 |
Target: 5'- gGGCCCGCgGGCGGgcGC-C-CCGgggCUa -3' miRNA: 3'- -CCGGGCGgUCGCCuaCGaGcGGUa--GA- -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 12135 | 0.67 | 0.589822 |
Target: 5'- cGCCCGCCGccGCGGcgGC-CGCgCAg-- -3' miRNA: 3'- cCGGGCGGU--CGCCuaCGaGCG-GUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 57381 | 0.67 | 0.588827 |
Target: 5'- cGCCCGCCAGCagcucggGGA-GCgCGCCcgUg -3' miRNA: 3'- cCGGGCGGUCG-------CCUaCGaGCGGuaGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 21232 | 0.67 | 0.579891 |
Target: 5'- gGGCCCGUCGGCuGGcgGCUuuucagggcgUGCCGc-- -3' miRNA: 3'- -CCGGGCGGUCG-CCuaCGA----------GCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 59373 | 0.67 | 0.579891 |
Target: 5'- cGCCCGCCAGCGcccGCgccacggCGCCGa-- -3' miRNA: 3'- cCGGGCGGUCGCcuaCGa------GCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 16729 | 0.67 | 0.5789 |
Target: 5'- uGGCCCucggcgaGCCGcGCGGgcGC-CGCCAUg- -3' miRNA: 3'- -CCGGG-------CGGU-CGCCuaCGaGCGGUAga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 49922 | 0.68 | 0.57395 |
Target: 5'- uGGCCCGCCucgaggcgcccgcggAGCcgcgcaaaaaaGGAgGCggCGCCGUCg -3' miRNA: 3'- -CCGGGCGG---------------UCG-----------CCUaCGa-GCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 50120 | 0.68 | 0.569997 |
Target: 5'- aGGgCCGCCAGCaGGuccacaagcuGUGCguugGCCGUCg -3' miRNA: 3'- -CCgGGCGGUCG-CC----------UACGag--CGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 118570 | 0.68 | 0.569997 |
Target: 5'- uGCCCGCgCGcGCGGcgGCgcgCGCCGc-- -3' miRNA: 3'- cCGGGCG-GU-CGCCuaCGa--GCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 38678 | 0.68 | 0.569997 |
Target: 5'- gGGCCCGCCAGUcucgcGCUgGCCGg-- -3' miRNA: 3'- -CCGGGCGGUCGccua-CGAgCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 15780 | 0.68 | 0.569997 |
Target: 5'- aGG-CCGCUGGCGGgcGC-CGCCcgCg -3' miRNA: 3'- -CCgGGCGGUCGCCuaCGaGCGGuaGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 5909 | 0.68 | 0.560144 |
Target: 5'- cGGCCgGCCGGCuGGcuaGCUCGCUc--- -3' miRNA: 3'- -CCGGgCGGUCG-CCua-CGAGCGGuaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 101289 | 0.68 | 0.560144 |
Target: 5'- gGGCCCGCgGucGUcGAUGCgCGCCGUUa -3' miRNA: 3'- -CCGGGCGgU--CGcCUACGaGCGGUAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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