Results 101 - 120 of 168 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23760 | 3' | -60.8 | NC_005261.1 | + | 117723 | 0.69 | 0.511706 |
Target: 5'- gGGCCCGCaAGCGGccGCgcgcuggCGCCGc-- -3' miRNA: 3'- -CCGGGCGgUCGCCuaCGa------GCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 127276 | 0.69 | 0.511706 |
Target: 5'- gGGCCCGCCcgccGCGGggGCa-GCCcUCc -3' miRNA: 3'- -CCGGGCGGu---CGCCuaCGagCGGuAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 70470 | 0.69 | 0.502218 |
Target: 5'- aGCCCGCgCcGCGGGUGCgCGCgCGUg- -3' miRNA: 3'- cCGGGCG-GuCGCCUACGaGCG-GUAga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 116072 | 0.69 | 0.492809 |
Target: 5'- uGGCgCGCCGGUccccguGGAUGC-CGCgGUCc -3' miRNA: 3'- -CCGgGCGGUCG------CCUACGaGCGgUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 124347 | 0.69 | 0.492809 |
Target: 5'- cGCCUcaGUgGGCGGcauUGCUgCGCCGUCUa -3' miRNA: 3'- cCGGG--CGgUCGCCu--ACGA-GCGGUAGA- -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 23777 | 0.69 | 0.483482 |
Target: 5'- gGGCCgGCUAG-GGuggGCUCGCCGg-- -3' miRNA: 3'- -CCGGgCGGUCgCCua-CGAGCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 23834 | 0.69 | 0.483482 |
Target: 5'- gGGCCgGCUAG-GGuggGCUCGCCGg-- -3' miRNA: 3'- -CCGGgCGGUCgCCua-CGAGCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 126073 | 0.69 | 0.483482 |
Target: 5'- cGCCCGCCGGCcucGGcggGCgCGcCCAUCUu -3' miRNA: 3'- cCGGGCGGUCG---CCua-CGaGC-GGUAGA- -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 29801 | 0.69 | 0.474241 |
Target: 5'- aGGCCggCGCCGGCGGc-GCgggCGCCcgCg -3' miRNA: 3'- -CCGG--GCGGUCGCCuaCGa--GCGGuaGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 12653 | 0.69 | 0.474241 |
Target: 5'- gGGCCgCGCCGGCGcGAca-UCGUCGUCc -3' miRNA: 3'- -CCGG-GCGGUCGC-CUacgAGCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 4077 | 0.69 | 0.474241 |
Target: 5'- -cCCCGaCCGGCGGcaGCggCGCCGUCa -3' miRNA: 3'- ccGGGC-GGUCGCCuaCGa-GCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 43421 | 0.69 | 0.474241 |
Target: 5'- cGGCcuccgCCGCCGGCGGGgagcugGCUCGgCGcCUg -3' miRNA: 3'- -CCG-----GGCGGUCGCCUa-----CGAGCgGUaGA- -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 46353 | 0.69 | 0.465089 |
Target: 5'- cGGUCCGgCAGgGGAacccgacgaagUGCUCGCUcUCg -3' miRNA: 3'- -CCGGGCgGUCgCCU-----------ACGAGCGGuAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 47268 | 0.69 | 0.465089 |
Target: 5'- cGGCCCGCCGGCGaaGAgcgccGCgUGCCA-CUg -3' miRNA: 3'- -CCGGGCGGUCGC--CUa----CGaGCGGUaGA- -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 59575 | 0.69 | 0.465089 |
Target: 5'- cGCgCGCCgcAGCGGGUGCcgCGCCGc-- -3' miRNA: 3'- cCGgGCGG--UCGCCUACGa-GCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 117995 | 0.69 | 0.465089 |
Target: 5'- cGGCCUGaCGGCGGcgGCgcuggaCGCUGUCg -3' miRNA: 3'- -CCGGGCgGUCGCCuaCGa-----GCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 59494 | 0.69 | 0.465089 |
Target: 5'- cGCCgCGCCAGCGGcgGCggUCGCacgCg -3' miRNA: 3'- cCGG-GCGGUCGCCuaCG--AGCGguaGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 109532 | 0.7 | 0.456029 |
Target: 5'- cGCCCGCC-GCGGGccccCUCGCCAc-- -3' miRNA: 3'- cCGGGCGGuCGCCUac--GAGCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 90222 | 0.7 | 0.456029 |
Target: 5'- cGCCCucGCgCGGCGGGcggGCgCGCCGUCg -3' miRNA: 3'- cCGGG--CG-GUCGCCUa--CGaGCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 64513 | 0.7 | 0.447065 |
Target: 5'- gGGCCCGCgGGCGGcucCUCGUCGg-- -3' miRNA: 3'- -CCGGGCGgUCGCCuacGAGCGGUaga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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