miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 3' -60.8 NC_005261.1 + 107 0.67 0.609764
Target:  5'- gGGCCCcgccgcccgcGCCGGCGccgccccuGGUGCUCGCgGggCUg -3'
miRNA:   3'- -CCGGG----------CGGUCGC--------CUACGAGCGgUa-GA- -5'
23760 3' -60.8 NC_005261.1 + 182 0.66 0.656779
Target:  5'- cGCCCcuggugcucccgggGCCAGCGG-UGC-CGCCGc-- -3'
miRNA:   3'- cCGGG--------------CGGUCGCCuACGaGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 1077 0.67 0.619763
Target:  5'- uGGCCCcgcuCCAGgGcGAgcccgGCUCGUCGUCc -3'
miRNA:   3'- -CCGGGc---GGUCgC-CUa----CGAGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 1285 0.74 0.259258
Target:  5'- cGCCCagGCCGGCGGG-GCUC-CCGUCg -3'
miRNA:   3'- cCGGG--CGGUCGCCUaCGAGcGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 2415 0.68 0.530895
Target:  5'- gGGcCCCGCgCGGCGGcggGC-CGCgAUCUc -3'
miRNA:   3'- -CC-GGGCG-GUCGCCua-CGaGCGgUAGA- -5'
23760 3' -60.8 NC_005261.1 + 2589 0.68 0.550339
Target:  5'- cGGCaCG-CGGCGGAaGC-CGCCGUCg -3'
miRNA:   3'- -CCGgGCgGUCGCCUaCGaGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 2776 0.69 0.511706
Target:  5'- aGGCCCGCCcccgAGgGGcUGC-CGCCggCg -3'
miRNA:   3'- -CCGGGCGG----UCgCCuACGaGCGGuaGa -5'
23760 3' -60.8 NC_005261.1 + 4077 0.69 0.474241
Target:  5'- -cCCCGaCCGGCGGcaGCggCGCCGUCa -3'
miRNA:   3'- ccGGGC-GGUCGCCuaCGa-GCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 4454 0.72 0.318443
Target:  5'- gGGCCCuCCAGCGGcgGCggcCCGUCg -3'
miRNA:   3'- -CCGGGcGGUCGCCuaCGagcGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 4665 0.67 0.609764
Target:  5'- cGGCCgCGgCGGCGGcgGCccccgUGUCAUCc -3'
miRNA:   3'- -CCGG-GCgGUCGCCuaCGa----GCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 5132 0.73 0.290958
Target:  5'- cGGCCCGCCGGCGcucGCgCGCC-UCg -3'
miRNA:   3'- -CCGGGCGGUCGCcuaCGaGCGGuAGa -5'
23760 3' -60.8 NC_005261.1 + 5508 0.69 0.511706
Target:  5'- gGGCCgCGgCAGCGGcgGCgaggcCGCCggCUu -3'
miRNA:   3'- -CCGG-GCgGUCGCCuaCGa----GCGGuaGA- -5'
23760 3' -60.8 NC_005261.1 + 5909 0.68 0.560144
Target:  5'- cGGCCgGCCGGCuGGcuaGCUCGCUc--- -3'
miRNA:   3'- -CCGGgCGGUCG-CCua-CGAGCGGuaga -5'
23760 3' -60.8 NC_005261.1 + 6180 0.7 0.447065
Target:  5'- aGGCCCGCCuaggugcgagGGCGGGcccaGCUgGCCcgCc -3'
miRNA:   3'- -CCGGGCGG----------UCGCCUa---CGAgCGGuaGa -5'
23760 3' -60.8 NC_005261.1 + 6255 0.68 0.530895
Target:  5'- uGCCCGCCccGCGGGgcgGCcCGCCGc-- -3'
miRNA:   3'- cCGGGCGGu-CGCCUa--CGaGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 10524 0.66 0.659774
Target:  5'- gGGCCC-CgCGGCGc--GCUCGCUGUCg -3'
miRNA:   3'- -CCGGGcG-GUCGCcuaCGAGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 11939 0.77 0.155893
Target:  5'- cGGCCCGCgCcGCGGcgGCUCGCCcggCg -3'
miRNA:   3'- -CCGGGCG-GuCGCCuaCGAGCGGua-Ga -5'
23760 3' -60.8 NC_005261.1 + 12135 0.67 0.589822
Target:  5'- cGCCCGCCGccGCGGcgGC-CGCgCAg-- -3'
miRNA:   3'- cCGGGCGGU--CGCCuaCGaGCG-GUaga -5'
23760 3' -60.8 NC_005261.1 + 12653 0.69 0.474241
Target:  5'- gGGCCgCGCCGGCGcGAca-UCGUCGUCc -3'
miRNA:   3'- -CCGG-GCGGUCGC-CUacgAGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 12785 0.74 0.265365
Target:  5'- gGGCUCGUCGGCGa--GCUCGUCGUCg -3'
miRNA:   3'- -CCGGGCGGUCGCcuaCGAGCGGUAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.