miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 3' -60.8 NC_005261.1 + 13084 0.74 0.24739
Target:  5'- cGGCCCGUCGGCGGGcggcggGCUCGgC-UCg -3'
miRNA:   3'- -CCGGGCGGUCGCCUa-----CGAGCgGuAGa -5'
23760 3' -60.8 NC_005261.1 + 13949 0.66 0.63978
Target:  5'- cGGCCCaGCCGcGCGGAaacgCGCgGUCa -3'
miRNA:   3'- -CCGGG-CGGU-CGCCUacgaGCGgUAGa -5'
23760 3' -60.8 NC_005261.1 + 14443 0.66 0.63978
Target:  5'- cGGCUCGCUcgcggggcgcgcGGCGGA-GCUCGCg---- -3'
miRNA:   3'- -CCGGGCGG------------UCGCCUaCGAGCGguaga -5'
23760 3' -60.8 NC_005261.1 + 15780 0.68 0.569997
Target:  5'- aGG-CCGCUGGCGGgcGC-CGCCcgCg -3'
miRNA:   3'- -CCgGGCGGUCGCCuaCGaGCGGuaGa -5'
23760 3' -60.8 NC_005261.1 + 16281 0.68 0.550339
Target:  5'- cGGCUCGCC--CGGggGggCGCCGUCg -3'
miRNA:   3'- -CCGGGCGGucGCCuaCgaGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 16424 0.66 0.679683
Target:  5'- aGGCCCccucgacgGCgGGCGGcgGCUCGUagcccuUCg -3'
miRNA:   3'- -CCGGG--------CGgUCGCCuaCGAGCGgu----AGa -5'
23760 3' -60.8 NC_005261.1 + 16729 0.67 0.5789
Target:  5'- uGGCCCucggcgaGCCGcGCGGgcGC-CGCCAUg- -3'
miRNA:   3'- -CCGGG-------CGGU-CGCCuaCGaGCGGUAga -5'
23760 3' -60.8 NC_005261.1 + 19158 0.68 0.537673
Target:  5'- cGGCCaGCCGGCGGAucacgcgaagcagcUGCcgggcgcagUCGCCuUCg -3'
miRNA:   3'- -CCGGgCGGUCGCCU--------------ACG---------AGCGGuAGa -5'
23760 3' -60.8 NC_005261.1 + 19875 0.71 0.37112
Target:  5'- -cCCCGCCGGCGGGcccGUcgucgccccagUCGCCGUCg -3'
miRNA:   3'- ccGGGCGGUCGCCUa--CG-----------AGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 21232 0.67 0.579891
Target:  5'- gGGCCCGUCGGCuGGcgGCUuuucagggcgUGCCGc-- -3'
miRNA:   3'- -CCGGGCGGUCG-CCuaCGA----------GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 21830 0.7 0.429437
Target:  5'- gGGCgCGCguGCGGGcggGCUCGCCccgCa -3'
miRNA:   3'- -CCGgGCGguCGCCUa--CGAGCGGua-Ga -5'
23760 3' -60.8 NC_005261.1 + 23207 0.68 0.530895
Target:  5'- gGGCCCG-CAGCGGcgGCcgCGCgCAa-- -3'
miRNA:   3'- -CCGGGCgGUCGCCuaCGa-GCG-GUaga -5'
23760 3' -60.8 NC_005261.1 + 23704 0.72 0.32489
Target:  5'- aGGCCCGCCcggucggguggcaAGCGGGUGgCcgCGCCGa-- -3'
miRNA:   3'- -CCGGGCGG-------------UCGCCUAC-Ga-GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 23777 0.69 0.483482
Target:  5'- gGGCCgGCUAG-GGuggGCUCGCCGg-- -3'
miRNA:   3'- -CCGGgCGGUCgCCua-CGAGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 23834 0.69 0.483482
Target:  5'- gGGCCgGCUAG-GGuggGCUCGCCGg-- -3'
miRNA:   3'- -CCGGgCGGUCgCCua-CGAGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 28566 0.66 0.689586
Target:  5'- cGGCCCGCCGGgccgaGGcgcGCgagCGCCggCg -3'
miRNA:   3'- -CCGGGCGGUCg----CCua-CGa--GCGGuaGa -5'
23760 3' -60.8 NC_005261.1 + 29308 0.67 0.599782
Target:  5'- uGGCCCGgCAGCGcGccGC-CGCCGc-- -3'
miRNA:   3'- -CCGGGCgGUCGC-CuaCGaGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 29801 0.69 0.474241
Target:  5'- aGGCCggCGCCGGCGGc-GCgggCGCCcgCg -3'
miRNA:   3'- -CCGG--GCGGUCGCCuaCGa--GCGGuaGa -5'
23760 3' -60.8 NC_005261.1 + 29834 0.66 0.659774
Target:  5'- cGCUCGCCGagcuGCGcGccGUGCUCGCCGg-- -3'
miRNA:   3'- cCGGGCGGU----CGC-C--UACGAGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 30315 0.73 0.277926
Target:  5'- aGCCCGCCGGCGGAagUGCcggCGCgG-CUg -3'
miRNA:   3'- cCGGGCGGUCGCCU--ACGa--GCGgUaGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.