miRNA display CGI


Results 61 - 80 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 3' -60.8 NC_005261.1 + 50120 0.68 0.569997
Target:  5'- aGGgCCGCCAGCaGGuccacaagcuGUGCguugGCCGUCg -3'
miRNA:   3'- -CCgGGCGGUCG-CC----------UACGag--CGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 50511 0.66 0.659774
Target:  5'- cGCCCaGCCAGCGcagcaggGC-CGUCGUCUu -3'
miRNA:   3'- cCGGG-CGGUCGCcua----CGaGCGGUAGA- -5'
23760 3' -60.8 NC_005261.1 + 51651 0.66 0.679683
Target:  5'- gGGCCCGCCuucggcacgcuAGUGGccGCgagcugcaUCGCgGUCg -3'
miRNA:   3'- -CCGGGCGG-----------UCGCCuaCG--------AGCGgUAGa -5'
23760 3' -60.8 NC_005261.1 + 52549 0.68 0.537673
Target:  5'- gGGCCgGCUGcucuagcgacucgcGCGcGA-GCUCGCCGUCg -3'
miRNA:   3'- -CCGGgCGGU--------------CGC-CUaCGAGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 57381 0.67 0.588827
Target:  5'- cGCCCGCCAGCagcucggGGA-GCgCGCCcgUg -3'
miRNA:   3'- cCGGGCGGUCG-------CCUaCGaGCGGuaGa -5'
23760 3' -60.8 NC_005261.1 + 57680 0.66 0.689586
Target:  5'- cGCCaGCCGGCGGGgcacaggGCcagcagggccUCGuCCAUCUg -3'
miRNA:   3'- cCGGgCGGUCGCCUa------CG----------AGC-GGUAGA- -5'
23760 3' -60.8 NC_005261.1 + 58229 0.66 0.649784
Target:  5'- cGCCCGCggCGGCGGGgucCUCgGCCAUg- -3'
miRNA:   3'- cCGGGCG--GUCGCCUac-GAG-CGGUAga -5'
23760 3' -60.8 NC_005261.1 + 59023 0.73 0.284383
Target:  5'- cGGCgCCGCCAGgaaCGGGUGC-CGCCGc-- -3'
miRNA:   3'- -CCG-GGCGGUC---GCCUACGaGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 59338 0.66 0.649784
Target:  5'- cGCCCGCC---GGGUcGC-CGCCGUCg -3'
miRNA:   3'- cCGGGCGGucgCCUA-CGaGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 59373 0.67 0.579891
Target:  5'- cGCCCGCCAGCGcccGCgccacggCGCCGa-- -3'
miRNA:   3'- cCGGGCGGUCGCcuaCGa------GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 59494 0.69 0.465089
Target:  5'- cGCCgCGCCAGCGGcgGCggUCGCacgCg -3'
miRNA:   3'- cCGG-GCGGUCGCCuaCG--AGCGguaGa -5'
23760 3' -60.8 NC_005261.1 + 59575 0.69 0.465089
Target:  5'- cGCgCGCCgcAGCGGGUGCcgCGCCGc-- -3'
miRNA:   3'- cCGgGCGG--UCGCCUACGa-GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 59720 0.66 0.658776
Target:  5'- cGCCCGCCgggcggcAGCGGcgGCgcgcggcCGCCcUCc -3'
miRNA:   3'- cCGGGCGG-------UCGCCuaCGa------GCGGuAGa -5'
23760 3' -60.8 NC_005261.1 + 59871 0.7 0.447065
Target:  5'- cGGCCUcguacggguGCCGGCGGGcagcaGCUCGUCGUa- -3'
miRNA:   3'- -CCGGG---------CGGUCGCCUa----CGAGCGGUAga -5'
23760 3' -60.8 NC_005261.1 + 61646 0.67 0.609764
Target:  5'- cGUCCGCCGGCGGAcUGa--GCCGa-- -3'
miRNA:   3'- cCGGGCGGUCGCCU-ACgagCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 62557 0.66 0.679683
Target:  5'- aGGCgCCGCCAGC--AUGCgccccggCGCCAc-- -3'
miRNA:   3'- -CCG-GGCGGUCGccUACGa------GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 63012 0.67 0.589822
Target:  5'- cGGCCgCGCCcgcGCGGgcGCcggCGCCcgCg -3'
miRNA:   3'- -CCGG-GCGGu--CGCCuaCGa--GCGGuaGa -5'
23760 3' -60.8 NC_005261.1 + 64513 0.7 0.447065
Target:  5'- gGGCCCGCgGGCGGcucCUCGUCGg-- -3'
miRNA:   3'- -CCGGGCGgUCGCCuacGAGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 65586 0.68 0.530895
Target:  5'- uGGUCCGCgAGCuccUGCUCGCCGg-- -3'
miRNA:   3'- -CCGGGCGgUCGccuACGAGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 66062 0.67 0.633775
Target:  5'- gGGCCCGCgguccccuccagcccCAGCaGAUGCgcggccaCGUCAUCc -3'
miRNA:   3'- -CCGGGCG---------------GUCGcCUACGa------GCGGUAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.