Results 81 - 100 of 168 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23760 | 3' | -60.8 | NC_005261.1 | + | 66110 | 0.68 | 0.540587 |
Target: 5'- aGCCCGCgCAGCGccuUGCccaucgucagCGCCGUCa -3' miRNA: 3'- cCGGGCG-GUCGCcu-ACGa---------GCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 67048 | 0.66 | 0.683649 |
Target: 5'- aGCCCGCCcguguaggcgggcgcGcGCGGggGCUCGCUcgggcgGUCc -3' miRNA: 3'- cCGGGCGG---------------U-CGCCuaCGAGCGG------UAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 67607 | 0.68 | 0.560144 |
Target: 5'- aGCCCGaaGGCGGAcGCcgCGCCAa-- -3' miRNA: 3'- cCGGGCggUCGCCUaCGa-GCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 68754 | 0.7 | 0.446175 |
Target: 5'- cGCCCGCCGgggcgccGCGGA-GC-CGCCGUg- -3' miRNA: 3'- cCGGGCGGU-------CGCCUaCGaGCGGUAga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 68861 | 0.67 | 0.619763 |
Target: 5'- cGCCCucuGCC-GCGGcUGUgCGCCGUCg -3' miRNA: 3'- cCGGG---CGGuCGCCuACGaGCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 70470 | 0.69 | 0.502218 |
Target: 5'- aGCCCGCgCcGCGGGUGCgCGCgCGUg- -3' miRNA: 3'- cCGGGCG-GuCGCCUACGaGCG-GUAga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 72232 | 0.7 | 0.420778 |
Target: 5'- cGCCgGCCGGCGG-UGCgCGCaaaGUCg -3' miRNA: 3'- cCGGgCGGUCGCCuACGaGCGg--UAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 72705 | 0.68 | 0.540587 |
Target: 5'- aGGUCCGCCAGCGucgcGCcCGCCGc-- -3' miRNA: 3'- -CCGGGCGGUCGCcua-CGaGCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 73619 | 0.68 | 0.540587 |
Target: 5'- cGGCCCGucgucgucuuccCCAGCccGUGCgCGCCGUCc -3' miRNA: 3'- -CCGGGC------------GGUCGccUACGaGCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 74809 | 0.75 | 0.235975 |
Target: 5'- aGGCCCGCgUGGCGGAggugGC-CGCCGUg- -3' miRNA: 3'- -CCGGGCG-GUCGCCUa---CGaGCGGUAga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 74981 | 0.66 | 0.669743 |
Target: 5'- cGCCCGCgc-CGGGUGCagaUCGCCAa-- -3' miRNA: 3'- cCGGGCGgucGCCUACG---AGCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 75072 | 0.72 | 0.332167 |
Target: 5'- cGCgCGCCGGCGGggGCUCGgcgggcaUCGUCUu -3' miRNA: 3'- cCGgGCGGUCGCCuaCGAGC-------GGUAGA- -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 76016 | 0.66 | 0.679683 |
Target: 5'- uGGCgCCGCgCAGCGccgcggGCgccccgcgCGCCAUCa -3' miRNA: 3'- -CCG-GGCG-GUCGCcua---CGa-------GCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 76522 | 0.68 | 0.550339 |
Target: 5'- uGCCCGUCuacgugGGCGGGUacCUCGCCcUCUa -3' miRNA: 3'- cCGGGCGG------UCGCCUAc-GAGCGGuAGA- -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 78887 | 0.66 | 0.669743 |
Target: 5'- cGGUUCGCCAGCaGcgGCcCGCCcUUg -3' miRNA: 3'- -CCGGGCGGUCGcCuaCGaGCGGuAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 79634 | 0.66 | 0.669743 |
Target: 5'- cGGCCCGgCAGCa---GCUCGUUGUCc -3' miRNA: 3'- -CCGGGCgGUCGccuaCGAGCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 80660 | 0.67 | 0.629771 |
Target: 5'- uGGUgUGCUcGCGG-UGCgCGCCGUCg -3' miRNA: 3'- -CCGgGCGGuCGCCuACGaGCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 81341 | 0.66 | 0.679683 |
Target: 5'- gGGgCCGUCGGCGGGgcggggGCUUGCgGg-- -3' miRNA: 3'- -CCgGGCGGUCGCCUa-----CGAGCGgUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 82276 | 0.66 | 0.689586 |
Target: 5'- -uCCCGCCGcuggucGCGGAUGCagCGCCc--- -3' miRNA: 3'- ccGGGCGGU------CGCCUACGa-GCGGuaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 82392 | 0.66 | 0.679683 |
Target: 5'- cGCCCaGCCcGCGGG-GC-CGUCGUCc -3' miRNA: 3'- cCGGG-CGGuCGCCUaCGaGCGGUAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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