miRNA display CGI


Results 101 - 120 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 3' -60.8 NC_005261.1 + 83510 0.66 0.679683
Target:  5'- cGCgCGCCGGUGGAaGCggcacgCGCCcUCc -3'
miRNA:   3'- cCGgGCGGUCGCCUaCGa-----GCGGuAGa -5'
23760 3' -60.8 NC_005261.1 + 84365 0.66 0.669743
Target:  5'- aGGCgCCGCCcGCGG--GCUCgGCC-UCg -3'
miRNA:   3'- -CCG-GGCGGuCGCCuaCGAG-CGGuAGa -5'
23760 3' -60.8 NC_005261.1 + 85358 0.69 0.511706
Target:  5'- cGGCCCGCUga-GGAUGUUCGCgCcgCc -3'
miRNA:   3'- -CCGGGCGGucgCCUACGAGCG-GuaGa -5'
23760 3' -60.8 NC_005261.1 + 86499 0.72 0.35548
Target:  5'- cGCCUGUCuGCGGcagggGCUUGCCGUCc -3'
miRNA:   3'- cCGGGCGGuCGCCua---CGAGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 87960 0.82 0.072182
Target:  5'- cGGCCCGCCGGCGGcggGCUCGgUAUUUa -3'
miRNA:   3'- -CCGGGCGGUCGCCua-CGAGCgGUAGA- -5'
23760 3' -60.8 NC_005261.1 + 90222 0.7 0.456029
Target:  5'- cGCCCucGCgCGGCGGGcggGCgCGCCGUCg -3'
miRNA:   3'- cCGGG--CG-GUCGCCUa--CGaGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 90388 0.72 0.347835
Target:  5'- aGGcCCCGCCGGCGGG-GCUggCGCCcggCg -3'
miRNA:   3'- -CC-GGGCGGUCGCCUaCGA--GCGGua-Ga -5'
23760 3' -60.8 NC_005261.1 + 91483 0.67 0.599782
Target:  5'- cGGCgCCGCC-GCGGccGC-CGCCcgCc -3'
miRNA:   3'- -CCG-GGCGGuCGCCuaCGaGCGGuaGa -5'
23760 3' -60.8 NC_005261.1 + 92926 0.66 0.649784
Target:  5'- cGCCgUGCCGGCGGAgcagcUGCcCGgCGUCc -3'
miRNA:   3'- cCGG-GCGGUCGCCU-----ACGaGCgGUAGa -5'
23760 3' -60.8 NC_005261.1 + 93689 0.74 0.24739
Target:  5'- cGGCggggCGCCGGCGGGUGCcucuuccuccUCGUCGUCg -3'
miRNA:   3'- -CCGg---GCGGUCGCCUACG----------AGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 95382 0.72 0.325613
Target:  5'- cGGCCCcCCGGCGcGccGCUCgcgGCCAUCa -3'
miRNA:   3'- -CCGGGcGGUCGC-CuaCGAG---CGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 95727 0.67 0.619763
Target:  5'- gGGCCCGCCgcgcucAGCGGc-GC-CGCCGc-- -3'
miRNA:   3'- -CCGGGCGG------UCGCCuaCGaGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 95804 0.78 0.130715
Target:  5'- aGCCggCGCCGGCGGggGCUCGCgGUCc -3'
miRNA:   3'- cCGG--GCGGUCGCCuaCGAGCGgUAGa -5'
23760 3' -60.8 NC_005261.1 + 97162 0.72 0.35548
Target:  5'- cGGCCCgGCCGGCuGGGUcGCgggCGCCGg-- -3'
miRNA:   3'- -CCGGG-CGGUCG-CCUA-CGa--GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 98316 0.73 0.277926
Target:  5'- gGGCgccgCCGCCAGCGGcgGCgCGCCccguGUCg -3'
miRNA:   3'- -CCG----GGCGGUCGCCuaCGaGCGG----UAGa -5'
23760 3' -60.8 NC_005261.1 + 98606 0.68 0.550339
Target:  5'- cGCCCGCaaaaucCGGCGGGuaUGCgUCGCCGa-- -3'
miRNA:   3'- cCGGGCG------GUCGCCU--ACG-AGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 99097 0.71 0.387224
Target:  5'- cGGCgCG-CAGCGGcuUGCUCGCgAUCa -3'
miRNA:   3'- -CCGgGCgGUCGCCu-ACGAGCGgUAGa -5'
23760 3' -60.8 NC_005261.1 + 99624 0.66 0.649784
Target:  5'- aGCgCCGCCAGCaggucgcccgGGAUGCacaugcgCGCCAg-- -3'
miRNA:   3'- cCG-GGCGGUCG----------CCUACGa------GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 99783 0.66 0.669743
Target:  5'- cGGCCCGggucCCAgucgcggcGCGGAUgGCgaacagcgCGCCGUCc -3'
miRNA:   3'- -CCGGGC----GGU--------CGCCUA-CGa-------GCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 101289 0.68 0.560144
Target:  5'- gGGCCCGCgGucGUcGAUGCgCGCCGUUa -3'
miRNA:   3'- -CCGGGCGgU--CGcCUACGaGCGGUAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.