miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 3' -60.8 NC_005261.1 + 137865 0.66 0.656779
Target:  5'- cGCCCcuggugcucccgggGCCAGCGG-UGC-CGCCGc-- -3'
miRNA:   3'- cCGGG--------------CGGUCGCCuACGaGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 137790 0.67 0.609764
Target:  5'- gGGCCCcgccgcccgcGCCGGCGccgccccuGGUGCUCGCgGggCUg -3'
miRNA:   3'- -CCGGG----------CGGUCGC--------CUACGAGCGgUa-GA- -5'
23760 3' -60.8 NC_005261.1 + 135065 0.72 0.35471
Target:  5'- cGGCCCGCCgcuuuccGGCGGcggGCUCGCgGc-- -3'
miRNA:   3'- -CCGGGCGG-------UCGCCua-CGAGCGgUaga -5'
23760 3' -60.8 NC_005261.1 + 134357 0.66 0.659774
Target:  5'- cGCgCCGCCGcGCGGGggGCggCGCCG-CUg -3'
miRNA:   3'- cCG-GGCGGU-CGCCUa-CGa-GCGGUaGA- -5'
23760 3' -60.8 NC_005261.1 + 134099 0.72 0.340309
Target:  5'- cGGCgCGCCGGCGcgcGCUCGCCGc-- -3'
miRNA:   3'- -CCGgGCGGUCGCcuaCGAGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 132610 0.67 0.619763
Target:  5'- cGGCgagCCGCCAGgGGgcGCUggCGCCGa-- -3'
miRNA:   3'- -CCG---GGCGGUCgCCuaCGA--GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 130566 0.75 0.219684
Target:  5'- cGGCCCGCCgGGCGGAaGCgcCGCCGc-- -3'
miRNA:   3'- -CCGGGCGG-UCGCCUaCGa-GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 128804 0.7 0.412225
Target:  5'- gGGCCCG-CGGCGGG-GCUCGCg---- -3'
miRNA:   3'- -CCGGGCgGUCGCCUaCGAGCGguaga -5'
23760 3' -60.8 NC_005261.1 + 127804 0.66 0.669743
Target:  5'- cGGCgCCGCggCGGCGGGccGCUCGCgcUCg -3'
miRNA:   3'- -CCG-GGCG--GUCGCCUa-CGAGCGguAGa -5'
23760 3' -60.8 NC_005261.1 + 127723 0.66 0.649784
Target:  5'- uGGCCUGCCugguAGCGGGaGCUUGgCggCg -3'
miRNA:   3'- -CCGGGCGG----UCGCCUaCGAGCgGuaGa -5'
23760 3' -60.8 NC_005261.1 + 127276 0.69 0.511706
Target:  5'- gGGCCCGCCcgccGCGGggGCa-GCCcUCc -3'
miRNA:   3'- -CCGGGCGGu---CGCCuaCGagCGGuAGa -5'
23760 3' -60.8 NC_005261.1 + 126457 0.71 0.37112
Target:  5'- aGCCgCGCCAGCGc--GCUCGCC-UCg -3'
miRNA:   3'- cCGG-GCGGUCGCcuaCGAGCGGuAGa -5'
23760 3' -60.8 NC_005261.1 + 126073 0.69 0.483482
Target:  5'- cGCCCGCCGGCcucGGcggGCgCGcCCAUCUu -3'
miRNA:   3'- cCGGGCGGUCG---CCua-CGaGC-GGUAGA- -5'
23760 3' -60.8 NC_005261.1 + 124347 0.69 0.492809
Target:  5'- cGCCUcaGUgGGCGGcauUGCUgCGCCGUCUa -3'
miRNA:   3'- cCGGG--CGgUCGCCu--ACGA-GCGGUAGA- -5'
23760 3' -60.8 NC_005261.1 + 123921 0.66 0.659774
Target:  5'- cGGCCCG--AGCaGGUGCgCGCCcgCUa -3'
miRNA:   3'- -CCGGGCggUCGcCUACGaGCGGuaGA- -5'
23760 3' -60.8 NC_005261.1 + 123411 0.73 0.311393
Target:  5'- uGCCgGCCAGgGGcggGCUCGCCAc-- -3'
miRNA:   3'- cCGGgCGGUCgCCua-CGAGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 122817 0.66 0.649784
Target:  5'- cGCCCGCCAGCacccgcgcUGCggCGCgGUCa -3'
miRNA:   3'- cCGGGCGGUCGccu-----ACGa-GCGgUAGa -5'
23760 3' -60.8 NC_005261.1 + 122375 0.66 0.678691
Target:  5'- cGGCCCcaccgcgGCCuGgGGgcGCUUGCCAa-- -3'
miRNA:   3'- -CCGGG-------CGGuCgCCuaCGAGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 121829 0.67 0.599782
Target:  5'- cGGgCCGCC-GCGGcgGCgcaccggCGCCAg-- -3'
miRNA:   3'- -CCgGGCGGuCGCCuaCGa------GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 119276 0.72 0.325613
Target:  5'- uGCUCGCUgGGCGGggGCUCGCCGa-- -3'
miRNA:   3'- cCGGGCGG-UCGCCuaCGAGCGGUaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.