miRNA display CGI


Results 41 - 60 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 3' -60.8 NC_005261.1 + 106270 0.66 0.659774
Target:  5'- cGCugCCGCCgGGCGGcccGUGCaaaCGCCGUCg -3'
miRNA:   3'- cCG--GGCGG-UCGCC---UACGa--GCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 105181 0.75 0.219684
Target:  5'- gGGCCCGCCGccgccGCGGcagGCUCGUCcgCUu -3'
miRNA:   3'- -CCGGGCGGU-----CGCCua-CGAGCGGuaGA- -5'
23760 3' -60.8 NC_005261.1 + 103817 0.73 0.304462
Target:  5'- cGCCCGCCGccagcagcucGCGGAggaGCUCGCCcUUg -3'
miRNA:   3'- cCGGGCGGU----------CGCCUa--CGAGCGGuAGa -5'
23760 3' -60.8 NC_005261.1 + 102688 0.68 0.521266
Target:  5'- cGUCCGCC-GCGGccgucgcUGC-CGCCGUCUc -3'
miRNA:   3'- cCGGGCGGuCGCCu------ACGaGCGGUAGA- -5'
23760 3' -60.8 NC_005261.1 + 102548 0.72 0.35548
Target:  5'- cGGCCCcaggcgcCCGGCGGAcaccGcCUCGCCGUCc -3'
miRNA:   3'- -CCGGGc------GGUCGCCUa---C-GAGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 102285 0.67 0.619763
Target:  5'- uGCCgCGCCAGCGGccGCggGUCGUa- -3'
miRNA:   3'- cCGG-GCGGUCGCCuaCGagCGGUAga -5'
23760 3' -60.8 NC_005261.1 + 102162 0.67 0.599782
Target:  5'- aGCUgCGCCAGCGGcgGCg-GCaCGUCg -3'
miRNA:   3'- cCGG-GCGGUCGCCuaCGagCG-GUAGa -5'
23760 3' -60.8 NC_005261.1 + 101467 0.66 0.659774
Target:  5'- aGCgCCGCCGGCGGcgGCgugaugCGCag-Ca -3'
miRNA:   3'- cCG-GGCGGUCGCCuaCGa-----GCGguaGa -5'
23760 3' -60.8 NC_005261.1 + 101289 0.68 0.560144
Target:  5'- gGGCCCGCgGucGUcGAUGCgCGCCGUUa -3'
miRNA:   3'- -CCGGGCGgU--CGcCUACGaGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 99783 0.66 0.669743
Target:  5'- cGGCCCGggucCCAgucgcggcGCGGAUgGCgaacagcgCGCCGUCc -3'
miRNA:   3'- -CCGGGC----GGU--------CGCCUA-CGa-------GCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 99624 0.66 0.649784
Target:  5'- aGCgCCGCCAGCaggucgcccgGGAUGCacaugcgCGCCAg-- -3'
miRNA:   3'- cCG-GGCGGUCG----------CCUACGa------GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 99097 0.71 0.387224
Target:  5'- cGGCgCG-CAGCGGcuUGCUCGCgAUCa -3'
miRNA:   3'- -CCGgGCgGUCGCCu-ACGAGCGgUAGa -5'
23760 3' -60.8 NC_005261.1 + 98606 0.68 0.550339
Target:  5'- cGCCCGCaaaaucCGGCGGGuaUGCgUCGCCGa-- -3'
miRNA:   3'- cCGGGCG------GUCGCCU--ACG-AGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 98316 0.73 0.277926
Target:  5'- gGGCgccgCCGCCAGCGGcgGCgCGCCccguGUCg -3'
miRNA:   3'- -CCG----GGCGGUCGCCuaCGaGCGG----UAGa -5'
23760 3' -60.8 NC_005261.1 + 97162 0.72 0.35548
Target:  5'- cGGCCCgGCCGGCuGGGUcGCgggCGCCGg-- -3'
miRNA:   3'- -CCGGG-CGGUCG-CCUA-CGa--GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 95804 0.78 0.130715
Target:  5'- aGCCggCGCCGGCGGggGCUCGCgGUCc -3'
miRNA:   3'- cCGG--GCGGUCGCCuaCGAGCGgUAGa -5'
23760 3' -60.8 NC_005261.1 + 95727 0.67 0.619763
Target:  5'- gGGCCCGCCgcgcucAGCGGc-GC-CGCCGc-- -3'
miRNA:   3'- -CCGGGCGG------UCGCCuaCGaGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 95382 0.72 0.325613
Target:  5'- cGGCCCcCCGGCGcGccGCUCgcgGCCAUCa -3'
miRNA:   3'- -CCGGGcGGUCGC-CuaCGAG---CGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 93689 0.74 0.24739
Target:  5'- cGGCggggCGCCGGCGGGUGCcucuuccuccUCGUCGUCg -3'
miRNA:   3'- -CCGg---GCGGUCGCCUACG----------AGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 92926 0.66 0.649784
Target:  5'- cGCCgUGCCGGCGGAgcagcUGCcCGgCGUCc -3'
miRNA:   3'- cCGG-GCGGUCGCCU-----ACGaGCgGUAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.