miRNA display CGI


Results 61 - 80 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 3' -60.8 NC_005261.1 + 91483 0.67 0.599782
Target:  5'- cGGCgCCGCC-GCGGccGC-CGCCcgCc -3'
miRNA:   3'- -CCG-GGCGGuCGCCuaCGaGCGGuaGa -5'
23760 3' -60.8 NC_005261.1 + 90388 0.72 0.347835
Target:  5'- aGGcCCCGCCGGCGGG-GCUggCGCCcggCg -3'
miRNA:   3'- -CC-GGGCGGUCGCCUaCGA--GCGGua-Ga -5'
23760 3' -60.8 NC_005261.1 + 90222 0.7 0.456029
Target:  5'- cGCCCucGCgCGGCGGGcggGCgCGCCGUCg -3'
miRNA:   3'- cCGGG--CG-GUCGCCUa--CGaGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 87960 0.82 0.072182
Target:  5'- cGGCCCGCCGGCGGcggGCUCGgUAUUUa -3'
miRNA:   3'- -CCGGGCGGUCGCCua-CGAGCgGUAGA- -5'
23760 3' -60.8 NC_005261.1 + 86499 0.72 0.35548
Target:  5'- cGCCUGUCuGCGGcagggGCUUGCCGUCc -3'
miRNA:   3'- cCGGGCGGuCGCCua---CGAGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 85358 0.69 0.511706
Target:  5'- cGGCCCGCUga-GGAUGUUCGCgCcgCc -3'
miRNA:   3'- -CCGGGCGGucgCCUACGAGCG-GuaGa -5'
23760 3' -60.8 NC_005261.1 + 84365 0.66 0.669743
Target:  5'- aGGCgCCGCCcGCGG--GCUCgGCC-UCg -3'
miRNA:   3'- -CCG-GGCGGuCGCCuaCGAG-CGGuAGa -5'
23760 3' -60.8 NC_005261.1 + 83510 0.66 0.679683
Target:  5'- cGCgCGCCGGUGGAaGCggcacgCGCCcUCc -3'
miRNA:   3'- cCGgGCGGUCGCCUaCGa-----GCGGuAGa -5'
23760 3' -60.8 NC_005261.1 + 82392 0.66 0.679683
Target:  5'- cGCCCaGCCcGCGGG-GC-CGUCGUCc -3'
miRNA:   3'- cCGGG-CGGuCGCCUaCGaGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 82276 0.66 0.689586
Target:  5'- -uCCCGCCGcuggucGCGGAUGCagCGCCc--- -3'
miRNA:   3'- ccGGGCGGU------CGCCUACGa-GCGGuaga -5'
23760 3' -60.8 NC_005261.1 + 81341 0.66 0.679683
Target:  5'- gGGgCCGUCGGCGGGgcggggGCUUGCgGg-- -3'
miRNA:   3'- -CCgGGCGGUCGCCUa-----CGAGCGgUaga -5'
23760 3' -60.8 NC_005261.1 + 80660 0.67 0.629771
Target:  5'- uGGUgUGCUcGCGG-UGCgCGCCGUCg -3'
miRNA:   3'- -CCGgGCGGuCGCCuACGaGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 79634 0.66 0.669743
Target:  5'- cGGCCCGgCAGCa---GCUCGUUGUCc -3'
miRNA:   3'- -CCGGGCgGUCGccuaCGAGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 78887 0.66 0.669743
Target:  5'- cGGUUCGCCAGCaGcgGCcCGCCcUUg -3'
miRNA:   3'- -CCGGGCGGUCGcCuaCGaGCGGuAGa -5'
23760 3' -60.8 NC_005261.1 + 76522 0.68 0.550339
Target:  5'- uGCCCGUCuacgugGGCGGGUacCUCGCCcUCUa -3'
miRNA:   3'- cCGGGCGG------UCGCCUAc-GAGCGGuAGA- -5'
23760 3' -60.8 NC_005261.1 + 76016 0.66 0.679683
Target:  5'- uGGCgCCGCgCAGCGccgcggGCgccccgcgCGCCAUCa -3'
miRNA:   3'- -CCG-GGCG-GUCGCcua---CGa-------GCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 75072 0.72 0.332167
Target:  5'- cGCgCGCCGGCGGggGCUCGgcgggcaUCGUCUu -3'
miRNA:   3'- cCGgGCGGUCGCCuaCGAGC-------GGUAGA- -5'
23760 3' -60.8 NC_005261.1 + 74981 0.66 0.669743
Target:  5'- cGCCCGCgc-CGGGUGCagaUCGCCAa-- -3'
miRNA:   3'- cCGGGCGgucGCCUACG---AGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 74809 0.75 0.235975
Target:  5'- aGGCCCGCgUGGCGGAggugGC-CGCCGUg- -3'
miRNA:   3'- -CCGGGCG-GUCGCCUa---CGaGCGGUAga -5'
23760 3' -60.8 NC_005261.1 + 73619 0.68 0.540587
Target:  5'- cGGCCCGucgucgucuuccCCAGCccGUGCgCGCCGUCc -3'
miRNA:   3'- -CCGGGC------------GGUCGccUACGaGCGGUAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.