miRNA display CGI


Results 81 - 100 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 3' -60.8 NC_005261.1 + 72705 0.68 0.540587
Target:  5'- aGGUCCGCCAGCGucgcGCcCGCCGc-- -3'
miRNA:   3'- -CCGGGCGGUCGCcua-CGaGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 72232 0.7 0.420778
Target:  5'- cGCCgGCCGGCGG-UGCgCGCaaaGUCg -3'
miRNA:   3'- cCGGgCGGUCGCCuACGaGCGg--UAGa -5'
23760 3' -60.8 NC_005261.1 + 70470 0.69 0.502218
Target:  5'- aGCCCGCgCcGCGGGUGCgCGCgCGUg- -3'
miRNA:   3'- cCGGGCG-GuCGCCUACGaGCG-GUAga -5'
23760 3' -60.8 NC_005261.1 + 68861 0.67 0.619763
Target:  5'- cGCCCucuGCC-GCGGcUGUgCGCCGUCg -3'
miRNA:   3'- cCGGG---CGGuCGCCuACGaGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 68754 0.7 0.446175
Target:  5'- cGCCCGCCGgggcgccGCGGA-GC-CGCCGUg- -3'
miRNA:   3'- cCGGGCGGU-------CGCCUaCGaGCGGUAga -5'
23760 3' -60.8 NC_005261.1 + 67607 0.68 0.560144
Target:  5'- aGCCCGaaGGCGGAcGCcgCGCCAa-- -3'
miRNA:   3'- cCGGGCggUCGCCUaCGa-GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 67048 0.66 0.683649
Target:  5'- aGCCCGCCcguguaggcgggcgcGcGCGGggGCUCGCUcgggcgGUCc -3'
miRNA:   3'- cCGGGCGG---------------U-CGCCuaCGAGCGG------UAGa -5'
23760 3' -60.8 NC_005261.1 + 66110 0.68 0.540587
Target:  5'- aGCCCGCgCAGCGccuUGCccaucgucagCGCCGUCa -3'
miRNA:   3'- cCGGGCG-GUCGCcu-ACGa---------GCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 66062 0.67 0.633775
Target:  5'- gGGCCCGCgguccccuccagcccCAGCaGAUGCgcggccaCGUCAUCc -3'
miRNA:   3'- -CCGGGCG---------------GUCGcCUACGa------GCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 65586 0.68 0.530895
Target:  5'- uGGUCCGCgAGCuccUGCUCGCCGg-- -3'
miRNA:   3'- -CCGGGCGgUCGccuACGAGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 64513 0.7 0.447065
Target:  5'- gGGCCCGCgGGCGGcucCUCGUCGg-- -3'
miRNA:   3'- -CCGGGCGgUCGCCuacGAGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 63012 0.67 0.589822
Target:  5'- cGGCCgCGCCcgcGCGGgcGCcggCGCCcgCg -3'
miRNA:   3'- -CCGG-GCGGu--CGCCuaCGa--GCGGuaGa -5'
23760 3' -60.8 NC_005261.1 + 62557 0.66 0.679683
Target:  5'- aGGCgCCGCCAGC--AUGCgccccggCGCCAc-- -3'
miRNA:   3'- -CCG-GGCGGUCGccUACGa------GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 61646 0.67 0.609764
Target:  5'- cGUCCGCCGGCGGAcUGa--GCCGa-- -3'
miRNA:   3'- cCGGGCGGUCGCCU-ACgagCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 59871 0.7 0.447065
Target:  5'- cGGCCUcguacggguGCCGGCGGGcagcaGCUCGUCGUa- -3'
miRNA:   3'- -CCGGG---------CGGUCGCCUa----CGAGCGGUAga -5'
23760 3' -60.8 NC_005261.1 + 59720 0.66 0.658776
Target:  5'- cGCCCGCCgggcggcAGCGGcgGCgcgcggcCGCCcUCc -3'
miRNA:   3'- cCGGGCGG-------UCGCCuaCGa------GCGGuAGa -5'
23760 3' -60.8 NC_005261.1 + 59575 0.69 0.465089
Target:  5'- cGCgCGCCgcAGCGGGUGCcgCGCCGc-- -3'
miRNA:   3'- cCGgGCGG--UCGCCUACGa-GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 59494 0.69 0.465089
Target:  5'- cGCCgCGCCAGCGGcgGCggUCGCacgCg -3'
miRNA:   3'- cCGG-GCGGUCGCCuaCG--AGCGguaGa -5'
23760 3' -60.8 NC_005261.1 + 59373 0.67 0.579891
Target:  5'- cGCCCGCCAGCGcccGCgccacggCGCCGa-- -3'
miRNA:   3'- cCGGGCGGUCGCcuaCGa------GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 59338 0.66 0.649784
Target:  5'- cGCCCGCC---GGGUcGC-CGCCGUCg -3'
miRNA:   3'- cCGGGCGGucgCCUA-CGaGCGGUAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.