miRNA display CGI


Results 41 - 60 of 168 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 3' -60.8 NC_005261.1 + 105181 0.75 0.219684
Target:  5'- gGGCCCGCCGccgccGCGGcagGCUCGUCcgCUu -3'
miRNA:   3'- -CCGGGCGGU-----CGCCua-CGAGCGGuaGA- -5'
23760 3' -60.8 NC_005261.1 + 106819 0.76 0.189976
Target:  5'- uGGCCCGCCAGCagcgcguGGUGCgCGUCGUCc -3'
miRNA:   3'- -CCGGGCGGUCGc------CUACGaGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 11939 0.77 0.155893
Target:  5'- cGGCCCGCgCcGCGGcgGCUCGCCcggCg -3'
miRNA:   3'- -CCGGGCG-GuCGCCuaCGAGCGGua-Ga -5'
23760 3' -60.8 NC_005261.1 + 95804 0.78 0.130715
Target:  5'- aGCCggCGCCGGCGGggGCUCGCgGUCc -3'
miRNA:   3'- cCGG--GCGGUCGCCuaCGAGCGgUAGa -5'
23760 3' -60.8 NC_005261.1 + 37444 0.82 0.074097
Target:  5'- gGGCUCGCCgaagauauaaGGCGGGUGCUCGCCggCa -3'
miRNA:   3'- -CCGGGCGG----------UCGCCUACGAGCGGuaGa -5'
23760 3' -60.8 NC_005261.1 + 30315 0.73 0.277926
Target:  5'- aGCCCGCCGGCGGAagUGCcggCGCgG-CUg -3'
miRNA:   3'- cCGGGCGGUCGCCU--ACGa--GCGgUaGA- -5'
23760 3' -60.8 NC_005261.1 + 98316 0.73 0.277926
Target:  5'- gGGCgccgCCGCCAGCGGcgGCgCGCCccguGUCg -3'
miRNA:   3'- -CCG----GGCGGUCGCCuaCGaGCGG----UAGa -5'
23760 3' -60.8 NC_005261.1 + 90388 0.72 0.347835
Target:  5'- aGGcCCCGCCGGCGGG-GCUggCGCCcggCg -3'
miRNA:   3'- -CC-GGGCGGUCGCCUaCGA--GCGGua-Ga -5'
23760 3' -60.8 NC_005261.1 + 134099 0.72 0.340309
Target:  5'- cGGCgCGCCGGCGcgcGCUCGCCGc-- -3'
miRNA:   3'- -CCGgGCGGUCGCcuaCGAGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 75072 0.72 0.332167
Target:  5'- cGCgCGCCGGCGGggGCUCGgcgggcaUCGUCUu -3'
miRNA:   3'- cCGgGCGGUCGCCuaCGAGC-------GGUAGA- -5'
23760 3' -60.8 NC_005261.1 + 95382 0.72 0.325613
Target:  5'- cGGCCCcCCGGCGcGccGCUCgcgGCCAUCa -3'
miRNA:   3'- -CCGGGcGGUCGC-CuaCGAG---CGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 119276 0.72 0.325613
Target:  5'- uGCUCGCUgGGCGGggGCUCGCCGa-- -3'
miRNA:   3'- cCGGGCGG-UCGCCuaCGAGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 23704 0.72 0.32489
Target:  5'- aGGCCCGCCcggucggguggcaAGCGGGUGgCcgCGCCGa-- -3'
miRNA:   3'- -CCGGGCGG-------------UCGCCUAC-Ga-GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 4454 0.72 0.318443
Target:  5'- gGGCCCuCCAGCGGcgGCggcCCGUCg -3'
miRNA:   3'- -CCGGGcGGUCGCCuaCGagcGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 123411 0.73 0.311393
Target:  5'- uGCCgGCCAGgGGcggGCUCGCCAc-- -3'
miRNA:   3'- cCGGgCGGUCgCCua-CGAGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 103817 0.73 0.304462
Target:  5'- cGCCCGCCGccagcagcucGCGGAggaGCUCGCCcUUg -3'
miRNA:   3'- cCGGGCGGU----------CGCCUa--CGAGCGGuAGa -5'
23760 3' -60.8 NC_005261.1 + 118162 0.73 0.304462
Target:  5'- uGGCCguCG-CGGCGGG-GCUUGCCGUCUg -3'
miRNA:   3'- -CCGG--GCgGUCGCCUaCGAGCGGUAGA- -5'
23760 3' -60.8 NC_005261.1 + 106769 0.73 0.297651
Target:  5'- aGCuuGCCGGCGGccaGCccagCGCCGUCUg -3'
miRNA:   3'- cCGggCGGUCGCCua-CGa---GCGGUAGA- -5'
23760 3' -60.8 NC_005261.1 + 5132 0.73 0.290958
Target:  5'- cGGCCCGCCGGCGcucGCgCGCC-UCg -3'
miRNA:   3'- -CCGGGCGGUCGCcuaCGaGCGGuAGa -5'
23760 3' -60.8 NC_005261.1 + 59023 0.73 0.284383
Target:  5'- cGGCgCCGCCAGgaaCGGGUGC-CGCCGc-- -3'
miRNA:   3'- -CCG-GGCGGUC---GCCUACGaGCGGUaga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.