Results 61 - 80 of 168 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23760 | 3' | -60.8 | NC_005261.1 | + | 118162 | 0.73 | 0.304462 |
Target: 5'- uGGCCguCG-CGGCGGG-GCUUGCCGUCUg -3' miRNA: 3'- -CCGG--GCgGUCGCCUaCGAGCGGUAGA- -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 103817 | 0.73 | 0.304462 |
Target: 5'- cGCCCGCCGccagcagcucGCGGAggaGCUCGCCcUUg -3' miRNA: 3'- cCGGGCGGU----------CGCCUa--CGAGCGGuAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 97162 | 0.72 | 0.35548 |
Target: 5'- cGGCCCgGCCGGCuGGGUcGCgggCGCCGg-- -3' miRNA: 3'- -CCGGG-CGGUCG-CCUA-CGa--GCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 102548 | 0.72 | 0.35548 |
Target: 5'- cGGCCCcaggcgcCCGGCGGAcaccGcCUCGCCGUCc -3' miRNA: 3'- -CCGGGc------GGUCGCCUa---C-GAGCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 126457 | 0.71 | 0.37112 |
Target: 5'- aGCCgCGCCAGCGc--GCUCGCC-UCg -3' miRNA: 3'- cCGG-GCGGUCGCcuaCGAGCGGuAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 19875 | 0.71 | 0.37112 |
Target: 5'- -cCCCGCCGGCGGGcccGUcgucgccccagUCGCCGUCg -3' miRNA: 3'- ccGGGCGGUCGCCUa--CG-----------AGCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 99097 | 0.71 | 0.387224 |
Target: 5'- cGGCgCG-CAGCGGcuUGCUCGCgAUCa -3' miRNA: 3'- -CCGgGCgGUCGCCu-ACGAGCGgUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 37354 | 0.71 | 0.395446 |
Target: 5'- -aUCCGCgGGCGG-UGCUCGCCGc-- -3' miRNA: 3'- ccGGGCGgUCGCCuACGAGCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 113132 | 0.71 | 0.403781 |
Target: 5'- cGCCCGCCGcGCGGcgGCugaacguggagaUCGCCGa-- -3' miRNA: 3'- cCGGGCGGU-CGCCuaCG------------AGCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 39483 | 0.7 | 0.412225 |
Target: 5'- gGGCCCGCC-GCGGAcgaUGaUCGCCccUCg -3' miRNA: 3'- -CCGGGCGGuCGCCU---ACgAGCGGu-AGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 86499 | 0.72 | 0.35548 |
Target: 5'- cGCCUGUCuGCGGcagggGCUUGCCGUCc -3' miRNA: 3'- cCGGGCGGuCGCCua---CGAGCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 135065 | 0.72 | 0.35471 |
Target: 5'- cGGCCCGCCgcuuuccGGCGGcggGCUCGCgGc-- -3' miRNA: 3'- -CCGGGCGG-------UCGCCua-CGAGCGgUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 123411 | 0.73 | 0.311393 |
Target: 5'- uGCCgGCCAGgGGcggGCUCGCCAc-- -3' miRNA: 3'- cCGGgCGGUCgCCua-CGAGCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 4454 | 0.72 | 0.318443 |
Target: 5'- gGGCCCuCCAGCGGcgGCggcCCGUCg -3' miRNA: 3'- -CCGGGcGGUCGCCuaCGagcGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 23704 | 0.72 | 0.32489 |
Target: 5'- aGGCCCGCCcggucggguggcaAGCGGGUGgCcgCGCCGa-- -3' miRNA: 3'- -CCGGGCGG-------------UCGCCUAC-Ga-GCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 119276 | 0.72 | 0.325613 |
Target: 5'- uGCUCGCUgGGCGGggGCUCGCCGa-- -3' miRNA: 3'- cCGGGCGG-UCGCCuaCGAGCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 95382 | 0.72 | 0.325613 |
Target: 5'- cGGCCCcCCGGCGcGccGCUCgcgGCCAUCa -3' miRNA: 3'- -CCGGGcGGUCGC-CuaCGAG---CGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 75072 | 0.72 | 0.332167 |
Target: 5'- cGCgCGCCGGCGGggGCUCGgcgggcaUCGUCUu -3' miRNA: 3'- cCGgGCGGUCGCCuaCGAGC-------GGUAGA- -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 134099 | 0.72 | 0.340309 |
Target: 5'- cGGCgCGCCGGCGcgcGCUCGCCGc-- -3' miRNA: 3'- -CCGgGCGGUCGCcuaCGAGCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 90388 | 0.72 | 0.347835 |
Target: 5'- aGGcCCCGCCGGCGGG-GCUggCGCCcggCg -3' miRNA: 3'- -CC-GGGCGGUCGCCUaCGA--GCGGua-Ga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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