Results 101 - 120 of 168 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23760 | 3' | -60.8 | NC_005261.1 | + | 59575 | 0.69 | 0.465089 |
Target: 5'- cGCgCGCCgcAGCGGGUGCcgCGCCGc-- -3' miRNA: 3'- cCGgGCGG--UCGCCUACGa-GCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 117995 | 0.69 | 0.465089 |
Target: 5'- cGGCCUGaCGGCGGcgGCgcuggaCGCUGUCg -3' miRNA: 3'- -CCGGGCgGUCGCCuaCGa-----GCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 29801 | 0.69 | 0.474241 |
Target: 5'- aGGCCggCGCCGGCGGc-GCgggCGCCcgCg -3' miRNA: 3'- -CCGG--GCGGUCGCCuaCGa--GCGGuaGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 12653 | 0.69 | 0.474241 |
Target: 5'- gGGCCgCGCCGGCGcGAca-UCGUCGUCc -3' miRNA: 3'- -CCGG-GCGGUCGC-CUacgAGCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 4077 | 0.69 | 0.474241 |
Target: 5'- -cCCCGaCCGGCGGcaGCggCGCCGUCa -3' miRNA: 3'- ccGGGC-GGUCGCCuaCGa-GCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 68754 | 0.7 | 0.446175 |
Target: 5'- cGCCCGCCGgggcgccGCGGA-GC-CGCCGUg- -3' miRNA: 3'- cCGGGCGGU-------CGCCUaCGaGCGGUAga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 118101 | 0.7 | 0.429437 |
Target: 5'- cGGCCCGCCGcGCaGAcGCUgCGCCGc-- -3' miRNA: 3'- -CCGGGCGGU-CGcCUaCGA-GCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 97162 | 0.72 | 0.35548 |
Target: 5'- cGGCCCgGCCGGCuGGGUcGCgggCGCCGg-- -3' miRNA: 3'- -CCGGG-CGGUCG-CCUA-CGa--GCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 102548 | 0.72 | 0.35548 |
Target: 5'- cGGCCCcaggcgcCCGGCGGAcaccGcCUCGCCGUCc -3' miRNA: 3'- -CCGGGc------GGUCGCCUa---C-GAGCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 126457 | 0.71 | 0.37112 |
Target: 5'- aGCCgCGCCAGCGc--GCUCGCC-UCg -3' miRNA: 3'- cCGG-GCGGUCGCcuaCGAGCGGuAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 19875 | 0.71 | 0.37112 |
Target: 5'- -cCCCGCCGGCGGGcccGUcgucgccccagUCGCCGUCg -3' miRNA: 3'- ccGGGCGGUCGCCUa--CG-----------AGCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 99097 | 0.71 | 0.387224 |
Target: 5'- cGGCgCG-CAGCGGcuUGCUCGCgAUCa -3' miRNA: 3'- -CCGgGCgGUCGCCu-ACGAGCGgUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 37354 | 0.71 | 0.395446 |
Target: 5'- -aUCCGCgGGCGG-UGCUCGCCGc-- -3' miRNA: 3'- ccGGGCGgUCGCCuACGAGCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 113132 | 0.71 | 0.403781 |
Target: 5'- cGCCCGCCGcGCGGcgGCugaacguggagaUCGCCGa-- -3' miRNA: 3'- cCGGGCGGU-CGCCuaCG------------AGCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 39483 | 0.7 | 0.412225 |
Target: 5'- gGGCCCGCC-GCGGAcgaUGaUCGCCccUCg -3' miRNA: 3'- -CCGGGCGGuCGCCU---ACgAGCGGu-AGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 109335 | 0.7 | 0.412225 |
Target: 5'- cGGCCgcgggGUCGGCGGccGCgUCGCCGUCc -3' miRNA: 3'- -CCGGg----CGGUCGCCuaCG-AGCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 128804 | 0.7 | 0.412225 |
Target: 5'- gGGCCCG-CGGCGGG-GCUCGCg---- -3' miRNA: 3'- -CCGGGCgGUCGCCUaCGAGCGguaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 72232 | 0.7 | 0.420778 |
Target: 5'- cGCCgGCCGGCGG-UGCgCGCaaaGUCg -3' miRNA: 3'- cCGGgCGGUCGCCuACGaGCGg--UAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 112464 | 0.7 | 0.428567 |
Target: 5'- gGGCCgUGCUAaacaugcGCGGcAUGCUCGCCcgCg -3' miRNA: 3'- -CCGG-GCGGU-------CGCC-UACGAGCGGuaGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 21830 | 0.7 | 0.429437 |
Target: 5'- gGGCgCGCguGCGGGcggGCUCGCCccgCa -3' miRNA: 3'- -CCGgGCGguCGCCUa--CGAGCGGua-Ga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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