Results 21 - 40 of 168 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23760 | 3' | -60.8 | NC_005261.1 | + | 103817 | 0.73 | 0.304462 |
Target: 5'- cGCCCGCCGccagcagcucGCGGAggaGCUCGCCcUUg -3' miRNA: 3'- cCGGGCGGU----------CGCCUa--CGAGCGGuAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 118162 | 0.73 | 0.304462 |
Target: 5'- uGGCCguCG-CGGCGGG-GCUUGCCGUCUg -3' miRNA: 3'- -CCGG--GCgGUCGCCUaCGAGCGGUAGA- -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 74809 | 0.75 | 0.235975 |
Target: 5'- aGGCCCGCgUGGCGGAggugGC-CGCCGUg- -3' miRNA: 3'- -CCGGGCG-GUCGCCUa---CGaGCGGUAga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 31299 | 0.75 | 0.229887 |
Target: 5'- cGGCCCGCCGccgcgcggggcccGCGGGcgcGCUCGCCGc-- -3' miRNA: 3'- -CCGGGCGGU-------------CGCCUa--CGAGCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 130566 | 0.75 | 0.219684 |
Target: 5'- cGGCCCGCCgGGCGGAaGCgcCGCCGc-- -3' miRNA: 3'- -CCGGGCGG-UCGCCUaCGa-GCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 105181 | 0.75 | 0.219684 |
Target: 5'- gGGCCCGCCGccgccGCGGcagGCUCGUCcgCUu -3' miRNA: 3'- -CCGGGCGGU-----CGCCua-CGAGCGGuaGA- -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 106819 | 0.76 | 0.189976 |
Target: 5'- uGGCCCGCCAGCagcgcguGGUGCgCGUCGUCc -3' miRNA: 3'- -CCGGGCGGUCGc------CUACGaGCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 11939 | 0.77 | 0.155893 |
Target: 5'- cGGCCCGCgCcGCGGcgGCUCGCCcggCg -3' miRNA: 3'- -CCGGGCG-GuCGCCuaCGAGCGGua-Ga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 95804 | 0.78 | 0.130715 |
Target: 5'- aGCCggCGCCGGCGGggGCUCGCgGUCc -3' miRNA: 3'- cCGG--GCGGUCGCCuaCGAGCGgUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 37444 | 0.82 | 0.074097 |
Target: 5'- gGGCUCGCCgaagauauaaGGCGGGUGCUCGCCggCa -3' miRNA: 3'- -CCGGGCGG----------UCGCCUACGAGCGGuaGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 93689 | 0.74 | 0.24739 |
Target: 5'- cGGCggggCGCCGGCGGGUGCcucuuccuccUCGUCGUCg -3' miRNA: 3'- -CCGg---GCGGUCGCCUACG----------AGCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 13084 | 0.74 | 0.24739 |
Target: 5'- cGGCCCGUCGGCGGGcggcggGCUCGgC-UCg -3' miRNA: 3'- -CCGGGCGGUCGCCUa-----CGAGCgGuAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 106769 | 0.73 | 0.297651 |
Target: 5'- aGCuuGCCGGCGGccaGCccagCGCCGUCUg -3' miRNA: 3'- cCGggCGGUCGCCua-CGa---GCGGUAGA- -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 5132 | 0.73 | 0.290958 |
Target: 5'- cGGCCCGCCGGCGcucGCgCGCC-UCg -3' miRNA: 3'- -CCGGGCGGUCGCcuaCGaGCGGuAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 59023 | 0.73 | 0.284383 |
Target: 5'- cGGCgCCGCCAGgaaCGGGUGC-CGCCGc-- -3' miRNA: 3'- -CCG-GGCGGUC---GCCUACGaGCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 98316 | 0.73 | 0.277926 |
Target: 5'- gGGCgccgCCGCCAGCGGcgGCgCGCCccguGUCg -3' miRNA: 3'- -CCG----GGCGGUCGCCuaCGaGCGG----UAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 30315 | 0.73 | 0.277926 |
Target: 5'- aGCCCGCCGGCGGAagUGCcggCGCgG-CUg -3' miRNA: 3'- cCGGGCGGUCGCCU--ACGa--GCGgUaGA- -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 12785 | 0.74 | 0.265365 |
Target: 5'- gGGCUCGUCGGCGa--GCUCGUCGUCg -3' miRNA: 3'- -CCGGGCGGUCGCcuaCGAGCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 1285 | 0.74 | 0.259258 |
Target: 5'- cGCCCagGCCGGCGGG-GCUC-CCGUCg -3' miRNA: 3'- cCGGG--CGGUCGCCUaCGAGcGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 38601 | 0.74 | 0.259258 |
Target: 5'- cGGCCCGCggcuGGCGGGUGUUgGCCGc-- -3' miRNA: 3'- -CCGGGCGg---UCGCCUACGAgCGGUaga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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