Results 41 - 60 of 168 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23760 | 3' | -60.8 | NC_005261.1 | + | 105181 | 0.75 | 0.219684 |
Target: 5'- gGGCCCGCCGccgccGCGGcagGCUCGUCcgCUu -3' miRNA: 3'- -CCGGGCGGU-----CGCCua-CGAGCGGuaGA- -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 106819 | 0.76 | 0.189976 |
Target: 5'- uGGCCCGCCAGCagcgcguGGUGCgCGUCGUCc -3' miRNA: 3'- -CCGGGCGGUCGc------CUACGaGCGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 11939 | 0.77 | 0.155893 |
Target: 5'- cGGCCCGCgCcGCGGcgGCUCGCCcggCg -3' miRNA: 3'- -CCGGGCG-GuCGCCuaCGAGCGGua-Ga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 95804 | 0.78 | 0.130715 |
Target: 5'- aGCCggCGCCGGCGGggGCUCGCgGUCc -3' miRNA: 3'- cCGG--GCGGUCGCCuaCGAGCGgUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 37444 | 0.82 | 0.074097 |
Target: 5'- gGGCUCGCCgaagauauaaGGCGGGUGCUCGCCggCa -3' miRNA: 3'- -CCGGGCGG----------UCGCCUACGAGCGGuaGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 30315 | 0.73 | 0.277926 |
Target: 5'- aGCCCGCCGGCGGAagUGCcggCGCgG-CUg -3' miRNA: 3'- cCGGGCGGUCGCCU--ACGa--GCGgUaGA- -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 98316 | 0.73 | 0.277926 |
Target: 5'- gGGCgccgCCGCCAGCGGcgGCgCGCCccguGUCg -3' miRNA: 3'- -CCG----GGCGGUCGCCuaCGaGCGG----UAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 90388 | 0.72 | 0.347835 |
Target: 5'- aGGcCCCGCCGGCGGG-GCUggCGCCcggCg -3' miRNA: 3'- -CC-GGGCGGUCGCCUaCGA--GCGGua-Ga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 134099 | 0.72 | 0.340309 |
Target: 5'- cGGCgCGCCGGCGcgcGCUCGCCGc-- -3' miRNA: 3'- -CCGgGCGGUCGCcuaCGAGCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 75072 | 0.72 | 0.332167 |
Target: 5'- cGCgCGCCGGCGGggGCUCGgcgggcaUCGUCUu -3' miRNA: 3'- cCGgGCGGUCGCCuaCGAGC-------GGUAGA- -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 95382 | 0.72 | 0.325613 |
Target: 5'- cGGCCCcCCGGCGcGccGCUCgcgGCCAUCa -3' miRNA: 3'- -CCGGGcGGUCGC-CuaCGAG---CGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 119276 | 0.72 | 0.325613 |
Target: 5'- uGCUCGCUgGGCGGggGCUCGCCGa-- -3' miRNA: 3'- cCGGGCGG-UCGCCuaCGAGCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 23704 | 0.72 | 0.32489 |
Target: 5'- aGGCCCGCCcggucggguggcaAGCGGGUGgCcgCGCCGa-- -3' miRNA: 3'- -CCGGGCGG-------------UCGCCUAC-Ga-GCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 4454 | 0.72 | 0.318443 |
Target: 5'- gGGCCCuCCAGCGGcgGCggcCCGUCg -3' miRNA: 3'- -CCGGGcGGUCGCCuaCGagcGGUAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 123411 | 0.73 | 0.311393 |
Target: 5'- uGCCgGCCAGgGGcggGCUCGCCAc-- -3' miRNA: 3'- cCGGgCGGUCgCCua-CGAGCGGUaga -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 103817 | 0.73 | 0.304462 |
Target: 5'- cGCCCGCCGccagcagcucGCGGAggaGCUCGCCcUUg -3' miRNA: 3'- cCGGGCGGU----------CGCCUa--CGAGCGGuAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 118162 | 0.73 | 0.304462 |
Target: 5'- uGGCCguCG-CGGCGGG-GCUUGCCGUCUg -3' miRNA: 3'- -CCGG--GCgGUCGCCUaCGAGCGGUAGA- -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 106769 | 0.73 | 0.297651 |
Target: 5'- aGCuuGCCGGCGGccaGCccagCGCCGUCUg -3' miRNA: 3'- cCGggCGGUCGCCua-CGa---GCGGUAGA- -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 5132 | 0.73 | 0.290958 |
Target: 5'- cGGCCCGCCGGCGcucGCgCGCC-UCg -3' miRNA: 3'- -CCGGGCGGUCGCcuaCGaGCGGuAGa -5' |
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23760 | 3' | -60.8 | NC_005261.1 | + | 59023 | 0.73 | 0.284383 |
Target: 5'- cGGCgCCGCCAGgaaCGGGUGC-CGCCGc-- -3' miRNA: 3'- -CCG-GGCGGUC---GCCUACGaGCGGUaga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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