miRNA display CGI


Results 21 - 40 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 5' -52.1 NC_005261.1 + 88724 0.66 0.97169
Target:  5'- uGCGGG-GUgcGCGAUgagggCCAGCUGGUGg -3'
miRNA:   3'- -CGUCUgCA--UGUUGaa---GGUCGACCGCg -5'
23760 5' -52.1 NC_005261.1 + 127433 0.66 0.977075
Target:  5'- cGCAGACuu-CAGCaUUCGGUccaGGCGCu -3'
miRNA:   3'- -CGUCUGcauGUUGaAGGUCGa--CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 10258 0.66 0.983492
Target:  5'- cGCGGGCcugGCGcCUUCUgcccugaGGaCUGGCGCc -3'
miRNA:   3'- -CGUCUGca-UGUuGAAGG-------UC-GACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 3544 0.66 0.981667
Target:  5'- --cGGCGcGCAGCg--CGGCgGGCGCg -3'
miRNA:   3'- cguCUGCaUGUUGaagGUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 104194 0.66 0.979466
Target:  5'- uCGGGCGggACGGCgUCCAggcGCUcGCGCg -3'
miRNA:   3'- cGUCUGCa-UGUUGaAGGU---CGAcCGCG- -5'
23760 5' -52.1 NC_005261.1 + 32024 0.66 0.983686
Target:  5'- gGCAGcGCGUGCuGCcg-CGGCUcgacgGGCGCa -3'
miRNA:   3'- -CGUC-UGCAUGuUGaagGUCGA-----CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 104324 0.66 0.979466
Target:  5'- cGCGGACGcGC-GCgUCCAGC-GGCcgGCc -3'
miRNA:   3'- -CGUCUGCaUGuUGaAGGUCGaCCG--CG- -5'
23760 5' -52.1 NC_005261.1 + 77771 0.66 0.978055
Target:  5'- gGCGG-CGgggACGACgaggccuacuaccCCGGCgagGGCGCg -3'
miRNA:   3'- -CGUCuGCa--UGUUGaa-----------GGUCGa--CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 125389 0.66 0.979466
Target:  5'- aCGGguGCGUGCGguACgUUCCGGagcGGCGCg -3'
miRNA:   3'- cGUC--UGCAUGU--UG-AAGGUCga-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 63952 0.66 0.97169
Target:  5'- uGCAGcccCGUGCG-----CAGCUGGUGCg -3'
miRNA:   3'- -CGUCu--GCAUGUugaagGUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 54298 0.66 0.971105
Target:  5'- cGCGGGCGccgguuaacacCAGC-UCCAGCaaGGCGUg -3'
miRNA:   3'- -CGUCUGCau---------GUUGaAGGUCGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 59109 0.66 0.973669
Target:  5'- cGCAGGCGcGCGcgaGCUcCCcggccaccgacucaGGCcGGCGCg -3'
miRNA:   3'- -CGUCUGCaUGU---UGAaGG--------------UCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 118406 0.66 0.97169
Target:  5'- cGCGGGCGccGCAGCcgcgCUGGCUGuCGCc -3'
miRNA:   3'- -CGUCUGCa-UGUUGaa--GGUCGACcGCG- -5'
23760 5' -52.1 NC_005261.1 + 39841 0.66 0.977075
Target:  5'- uGguGACGUGgAugU-CCcGCcgGGCGCc -3'
miRNA:   3'- -CguCUGCAUgUugAaGGuCGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 18349 0.66 0.974486
Target:  5'- cGCAGcACGaGCGACgUCCcGCUaaGCGCg -3'
miRNA:   3'- -CGUC-UGCaUGUUGaAGGuCGAc-CGCG- -5'
23760 5' -52.1 NC_005261.1 + 20078 0.66 0.983099
Target:  5'- cGCuGACGUcugaguauaaauccGCGgggGCUUCCgcGGCaaGGCGCg -3'
miRNA:   3'- -CGuCUGCA--------------UGU---UGAAGG--UCGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 14961 0.66 0.971399
Target:  5'- aGCGGGCGUgccugggGCGACUgcgcggCCGcGCcGGcCGCg -3'
miRNA:   3'- -CGUCUGCA-------UGUUGAa-----GGU-CGaCC-GCG- -5'
23760 5' -52.1 NC_005261.1 + 114059 0.66 0.974486
Target:  5'- -aGGACGUggcGCGGCU--CAGC-GGCGCc -3'
miRNA:   3'- cgUCUGCA---UGUUGAagGUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 110210 0.66 0.983686
Target:  5'- gGCcuGGCGcaaccucgGCGACgccUCCAGCgugggcGGCGCg -3'
miRNA:   3'- -CGu-CUGCa-------UGUUGa--AGGUCGa-----CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 134078 0.66 0.974486
Target:  5'- cGCGGcucAUGUGCgAGCUcUCGGCgcgccGGCGCg -3'
miRNA:   3'- -CGUC---UGCAUG-UUGAaGGUCGa----CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.