miRNA display CGI


Results 41 - 60 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 5' -52.1 NC_005261.1 + 68769 0.66 0.983686
Target:  5'- cGCGGAgccgcCGUGuCgAACUUCguGCaGGUGCg -3'
miRNA:   3'- -CGUCU-----GCAU-G-UUGAAGguCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 127677 0.66 0.97169
Target:  5'- -gGGACGgcgGCGgccGCUgccCCGGC-GGCGCc -3'
miRNA:   3'- cgUCUGCa--UGU---UGAa--GGUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 88724 0.66 0.97169
Target:  5'- uGCGGG-GUgcGCGAUgagggCCAGCUGGUGg -3'
miRNA:   3'- -CGUCUgCA--UGUUGaa---GGUCGACCGCg -5'
23760 5' -52.1 NC_005261.1 + 29817 0.66 0.97169
Target:  5'- cGCGGGCGcccGCGccgcGCUcgCCgAGCUGcGCGCc -3'
miRNA:   3'- -CGUCUGCa--UGU----UGAa-GG-UCGAC-CGCG- -5'
23760 5' -52.1 NC_005261.1 + 46478 0.66 0.97169
Target:  5'- cGCAG--GUGCAGCUcggcgcccUCC-GCggGGCGCa -3'
miRNA:   3'- -CGUCugCAUGUUGA--------AGGuCGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 63952 0.66 0.97169
Target:  5'- uGCAGcccCGUGCG-----CAGCUGGUGCg -3'
miRNA:   3'- -CGUCu--GCAUGUugaagGUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 83078 0.66 0.983686
Target:  5'- cGCGG-CGgcCGgcGCUUCCAGCgccuccaGCGCc -3'
miRNA:   3'- -CGUCuGCauGU--UGAAGGUCGac-----CGCG- -5'
23760 5' -52.1 NC_005261.1 + 14961 0.66 0.971399
Target:  5'- aGCGGGCGUgccugggGCGACUgcgcggCCGcGCcGGcCGCg -3'
miRNA:   3'- -CGUCUGCA-------UGUUGAa-----GGU-CGaCC-GCG- -5'
23760 5' -52.1 NC_005261.1 + 18349 0.66 0.974486
Target:  5'- cGCAGcACGaGCGACgUCCcGCUaaGCGCg -3'
miRNA:   3'- -CGUC-UGCaUGUUGaAGGuCGAc-CGCG- -5'
23760 5' -52.1 NC_005261.1 + 1548 0.66 0.97169
Target:  5'- cGCAGGCcagGUACAcCggCCgcAGC-GGCGCg -3'
miRNA:   3'- -CGUCUG---CAUGUuGaaGG--UCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 125909 0.67 0.957145
Target:  5'- cCAGAUGUgugGCGggGCUcgCCAcgcgcacgguagccGCUGGCGCg -3'
miRNA:   3'- cGUCUGCA---UGU--UGAa-GGU--------------CGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 76751 0.67 0.95597
Target:  5'- cGCGGACGUggcgcaccccGCGuuCUUCgGcgcggacgcccccgcGCUGGCGCc -3'
miRNA:   3'- -CGUCUGCA----------UGUu-GAAGgU---------------CGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 43170 0.67 0.954369
Target:  5'- cGCGGcGCGaUACGGCgccgCCGGCgaggcagaggUGGUGCg -3'
miRNA:   3'- -CGUC-UGC-AUGUUGaa--GGUCG----------ACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 108761 0.67 0.954369
Target:  5'- cGCGGcgcgccgcgccACGgcaccauggGCAcCUUCCAGUUGGCaGCg -3'
miRNA:   3'- -CGUC-----------UGCa--------UGUuGAAGGUCGACCG-CG- -5'
23760 5' -52.1 NC_005261.1 + 30323 0.67 0.96868
Target:  5'- gGCGGAaGUGcCGGCg--CGGCUGGCGg -3'
miRNA:   3'- -CGUCUgCAU-GUUGaagGUCGACCGCg -5'
23760 5' -52.1 NC_005261.1 + 107257 0.67 0.96868
Target:  5'- cGCGGGCGcGCGGgcaCgGGCgGGCGCg -3'
miRNA:   3'- -CGUCUGCaUGUUgaaGgUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 55906 0.67 0.967414
Target:  5'- cCGG-UGUGCuuCUUCCAGCcgcagccgccgccGGCGCg -3'
miRNA:   3'- cGUCuGCAUGuuGAAGGUCGa------------CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 2648 0.67 0.954369
Target:  5'- cGCGGGCGggcagcgGCGGCUcccgCCGcGCUggggacccggcGGCGCg -3'
miRNA:   3'- -CGUCUGCa------UGUUGAa---GGU-CGA-----------CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 59440 0.67 0.958299
Target:  5'- gGCAGGCGccgGCAGCagCgCGGCcgcGGCGUc -3'
miRNA:   3'- -CGUCUGCa--UGUUGaaG-GUCGa--CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 44051 0.67 0.967734
Target:  5'- cGCGGGCGgGCAGCagauccaggacgccUUCCGgGCguccgUGGUGCa -3'
miRNA:   3'- -CGUCUGCaUGUUG--------------AAGGU-CG-----ACCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.