miRNA display CGI


Results 61 - 80 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 5' -52.1 NC_005261.1 + 107257 0.67 0.96868
Target:  5'- cGCGGGCGcGCGGgcaCgGGCgGGCGCg -3'
miRNA:   3'- -CGUCUGCaUGUUgaaGgUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 2648 0.67 0.954369
Target:  5'- cGCGGGCGggcagcgGCGGCUcccgCCGcGCUggggacccggcGGCGCg -3'
miRNA:   3'- -CGUCUGCa------UGUUGAa---GGU-CGA-----------CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 108761 0.67 0.954369
Target:  5'- cGCGGcgcgccgcgccACGgcaccauggGCAcCUUCCAGUUGGCaGCg -3'
miRNA:   3'- -CGUC-----------UGCa--------UGUuGAAGGUCGACCG-CG- -5'
23760 5' -52.1 NC_005261.1 + 76751 0.67 0.95597
Target:  5'- cGCGGACGUggcgcaccccGCGuuCUUCgGcgcggacgcccccgcGCUGGCGCc -3'
miRNA:   3'- -CGUCUGCA----------UGUu-GAAGgU---------------CGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 94344 0.67 0.961991
Target:  5'- gGUAGGCGU-CGAUcgUCCGGCacacaGCGCa -3'
miRNA:   3'- -CGUCUGCAuGUUGa-AGGUCGac---CGCG- -5'
23760 5' -52.1 NC_005261.1 + 77543 0.67 0.965449
Target:  5'- cCGGGCugGUACGGCgccgccgCCAG-UGGCGCc -3'
miRNA:   3'- cGUCUG--CAUGUUGaa-----GGUCgACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 55906 0.67 0.967414
Target:  5'- cCGG-UGUGCuuCUUCCAGCcgcagccgccgccGGCGCg -3'
miRNA:   3'- cGUCuGCAUGuuGAAGGUCGa------------CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 44051 0.67 0.967734
Target:  5'- cGCGGGCGgGCAGCagauccaggacgccUUCCGgGCguccgUGGUGCa -3'
miRNA:   3'- -CGUCUGCaUGUUG--------------AAGGU-CG-----ACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 113904 0.67 0.96868
Target:  5'- gGCGGGCGcgAUGGCcgaggCAGCgGGCGCg -3'
miRNA:   3'- -CGUCUGCa-UGUUGaag--GUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 30323 0.67 0.96868
Target:  5'- gGCGGAaGUGcCGGCg--CGGCUGGCGg -3'
miRNA:   3'- -CGUCUgCAU-GUUGaagGUCGACCGCg -5'
23760 5' -52.1 NC_005261.1 + 73687 0.67 0.958299
Target:  5'- cGCGGGCuuagACGGCU--CGGCcaUGGCGCa -3'
miRNA:   3'- -CGUCUGca--UGUUGAagGUCG--ACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 102149 0.68 0.936183
Target:  5'- cGC-GAUGUcgcGCAGCUgcgCCAGCggcGGCGg -3'
miRNA:   3'- -CGuCUGCA---UGUUGAa--GGUCGa--CCGCg -5'
23760 5' -52.1 NC_005261.1 + 100793 0.68 0.936183
Target:  5'- cGCAGGCcaGCAGgUcCCGGaagGGCGCg -3'
miRNA:   3'- -CGUCUGcaUGUUgAaGGUCga-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 34386 0.68 0.936183
Target:  5'- cGCAGACGcggcGCAGgaguuuauCgaCCGGgUGGCGCg -3'
miRNA:   3'- -CGUCUGCa---UGUU--------GaaGGUCgACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 35012 0.68 0.936183
Target:  5'- uGCGGuGCGgcCGGCgUCUcggucGCUGGCGCg -3'
miRNA:   3'- -CGUC-UGCauGUUGaAGGu----CGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 126034 0.68 0.941106
Target:  5'- cGCGGccgcGCGUACGAgUgcUCCcGCUccGGCGCc -3'
miRNA:   3'- -CGUC----UGCAUGUUgA--AGGuCGA--CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 92818 0.68 0.933107
Target:  5'- cGCGGGCGUGgGACcgcgcgcagagUCCAGCUccagcucccgggcccGGcCGCa -3'
miRNA:   3'- -CGUCUGCAUgUUGa----------AGGUCGA---------------CC-GCG- -5'
23760 5' -52.1 NC_005261.1 + 135595 0.68 0.943004
Target:  5'- gGCcGGCGccgugcuggagaaccUGCGGCUga-AGCUGGCGCc -3'
miRNA:   3'- -CGuCUGC---------------AUGUUGAaggUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 1868 0.68 0.950196
Target:  5'- -aAGACGcGCcGCgaggCCAGCacGGCGCg -3'
miRNA:   3'- cgUCUGCaUGuUGaa--GGUCGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 3842 0.68 0.950196
Target:  5'- cGCuGGCG-GCAGCggcgCCGGCgccGCGCg -3'
miRNA:   3'- -CGuCUGCaUGUUGaa--GGUCGac-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.