miRNA display CGI


Results 81 - 100 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 5' -52.1 NC_005261.1 + 92818 0.68 0.933107
Target:  5'- cGCGGGCGUGgGACcgcgcgcagagUCCAGCUccagcucccgggcccGGcCGCa -3'
miRNA:   3'- -CGUCUGCAUgUUGa----------AGGUCGA---------------CC-GCG- -5'
23760 5' -52.1 NC_005261.1 + 3430 0.68 0.931005
Target:  5'- cGCGGGC---CAGCgUCCAgGCgGGCGCg -3'
miRNA:   3'- -CGUCUGcauGUUGaAGGU-CGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 100214 0.68 0.931005
Target:  5'- aGCAGccccGCGUAgAGCUcggCCAccGCcgGGCGCa -3'
miRNA:   3'- -CGUC----UGCAUgUUGAa--GGU--CGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 35012 0.68 0.936183
Target:  5'- uGCGGuGCGgcCGGCgUCUcggucGCUGGCGCg -3'
miRNA:   3'- -CGUC-UGCauGUUGaAGGu----CGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 112065 0.68 0.945776
Target:  5'- uCGGGCGUGCccucgUCGGCgagGGCGCc -3'
miRNA:   3'- cGUCUGCAUGuugaaGGUCGa--CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 43992 0.68 0.950196
Target:  5'- uCGGACGUGgacaccuccCAGC--CCGGCUucGGCGCg -3'
miRNA:   3'- cGUCUGCAU---------GUUGaaGGUCGA--CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 1046 0.68 0.950196
Target:  5'- gGCGGGCG-GCGGCgu-UAGC-GGCGCg -3'
miRNA:   3'- -CGUCUGCaUGUUGaagGUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 88167 0.68 0.950196
Target:  5'- cGCAGcCGggccgggGCGACg-CCGGC-GGCGCc -3'
miRNA:   3'- -CGUCuGCa------UGUUGaaGGUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 3842 0.68 0.950196
Target:  5'- cGCuGGCG-GCAGCggcgCCGGCgccGCGCg -3'
miRNA:   3'- -CGuCUGCaUGUUGaa--GGUCGac-CGCG- -5'
23760 5' -52.1 NC_005261.1 + 1868 0.68 0.950196
Target:  5'- -aAGACGcGCcGCgaggCCAGCacGGCGCg -3'
miRNA:   3'- cgUCUGCaUGuUGaa--GGUCGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 70791 0.68 0.950196
Target:  5'- -aAGGCGUccaGCAGCUcaaaguccgcgCCGGCggccccgGGCGCg -3'
miRNA:   3'- cgUCUGCA---UGUUGAa----------GGUCGa------CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 21172 0.68 0.950196
Target:  5'- aGCAGAgaUGCAGCc----GCUGGCGCg -3'
miRNA:   3'- -CGUCUgcAUGUUGaagguCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 132595 0.68 0.945776
Target:  5'- cGCGGACGcccggccCGGCgagCCGccagggggcGCUGGCGCc -3'
miRNA:   3'- -CGUCUGCau-----GUUGaa-GGU---------CGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 51739 0.68 0.945776
Target:  5'- cGCAGGCccccgggcUGCcGCUggCCgugaAGCUGGCGCu -3'
miRNA:   3'- -CGUCUGc-------AUGuUGAa-GG----UCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 127288 0.68 0.945776
Target:  5'- cGCGGGg--GCAGCccuccccgCCGGCUGGCGg -3'
miRNA:   3'- -CGUCUgcaUGUUGaa------GGUCGACCGCg -5'
23760 5' -52.1 NC_005261.1 + 31321 0.68 0.948458
Target:  5'- cGCGGGCGcGCucGCcgCCAGCgcgccgcugcggcGGCGCg -3'
miRNA:   3'- -CGUCUGCaUGu-UGaaGGUCGa------------CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 95308 0.68 0.948458
Target:  5'- cGCAGACGgacUGCGACcccuacguccgggUCCAGaacacgGGCGUg -3'
miRNA:   3'- -CGUCUGC---AUGUUGa------------AGGUCga----CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 102326 0.69 0.925573
Target:  5'- cGCGG-CGcGCAGCcgcgCCAGCUcGGcCGCg -3'
miRNA:   3'- -CGUCuGCaUGUUGaa--GGUCGA-CC-GCG- -5'
23760 5' -52.1 NC_005261.1 + 53704 0.69 0.925573
Target:  5'- cCGGGCGccGCGcgccGCggCCAGCUgcGGCGCg -3'
miRNA:   3'- cGUCUGCa-UGU----UGaaGGUCGA--CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 119632 0.69 0.925573
Target:  5'- uGCGG-CGUggccgACAACgccaCCGGC-GGCGCg -3'
miRNA:   3'- -CGUCuGCA-----UGUUGaa--GGUCGaCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.