miRNA display CGI


Results 41 - 60 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 5' -52.1 NC_005261.1 + 108196 0.71 0.85754
Target:  5'- cCGGGCGcgAgAGCUgcgCCAGCacGGCGCg -3'
miRNA:   3'- cGUCUGCa-UgUUGAa--GGUCGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 78245 0.71 0.823945
Target:  5'- cGCAGGCGUGCGAC--CCGGCggauaucuucgUGGCcCa -3'
miRNA:   3'- -CGUCUGCAUGUUGaaGGUCG-----------ACCGcG- -5'
23760 5' -52.1 NC_005261.1 + 58672 0.71 0.823945
Target:  5'- cGCGGugGUACGGCaggaggCCcgGGCcgucagGGCGCg -3'
miRNA:   3'- -CGUCugCAUGUUGaa----GG--UCGa-----CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 20449 0.71 0.823945
Target:  5'- cGCAGACGUGCccgcgCgGGUgUGGCGCu -3'
miRNA:   3'- -CGUCUGCAUGuugaaGgUCG-ACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 55404 0.71 0.823064
Target:  5'- -gAGAC-UGCAucuacgcGCgcgCCGGCUGGCGCc -3'
miRNA:   3'- cgUCUGcAUGU-------UGaa-GGUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 36927 0.71 0.823945
Target:  5'- -gGGACGUACucCggggCCcugcGCUGGCGCa -3'
miRNA:   3'- cgUCUGCAUGuuGaa--GGu---CGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 129190 0.71 0.823945
Target:  5'- cGCAGgccagcGCGUggcGCAGCUgcUUCuGCUGGUGCg -3'
miRNA:   3'- -CGUC------UGCA---UGUUGA--AGGuCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 29547 0.71 0.823945
Target:  5'- cGCGGGCccg-GACcUgCAGCUGGCGCg -3'
miRNA:   3'- -CGUCUGcaugUUGaAgGUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 117401 0.71 0.823945
Target:  5'- -gGGGCGccCGACUUUCGGCUGGaGCu -3'
miRNA:   3'- cgUCUGCauGUUGAAGGUCGACCgCG- -5'
23760 5' -52.1 NC_005261.1 + 13690 0.71 0.823945
Target:  5'- cGCGGGCGUGgGGCggggCgGGCUGGgGg -3'
miRNA:   3'- -CGUCUGCAUgUUGaa--GgUCGACCgCg -5'
23760 5' -52.1 NC_005261.1 + 4572 0.7 0.880479
Target:  5'- cGCGGGCGgg-----UCCGGCggGGCGCc -3'
miRNA:   3'- -CGUCUGCauguugaAGGUCGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 61030 0.7 0.880479
Target:  5'- -gGGGCGgcaccGCGGCagCUGGCUGGUGCu -3'
miRNA:   3'- cgUCUGCa----UGUUGaaGGUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 62616 0.7 0.880479
Target:  5'- gGUAGGCGgccauCAGCg-CCAGCguguccGGCGCg -3'
miRNA:   3'- -CGUCUGCau---GUUGaaGGUCGa-----CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 76032 0.7 0.876056
Target:  5'- cGCGGGCGccccgcgcgccauCAGCguggCCGGCgGGCGCc -3'
miRNA:   3'- -CGUCUGCau-----------GUUGaa--GGUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 127632 0.7 0.873061
Target:  5'- cCGGACGcgacgGCGGCggcgCCGGggGGCGCg -3'
miRNA:   3'- cGUCUGCa----UGUUGaa--GGUCgaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 32185 0.7 0.865413
Target:  5'- uGCGGGCG-GCGcgcGCUgg-AGCUGGCGCc -3'
miRNA:   3'- -CGUCUGCaUGU---UGAaggUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 114233 0.7 0.865413
Target:  5'- cGCGGGUGUACAGCgccaUUCAGCUGcUGCu -3'
miRNA:   3'- -CGUCUGCAUGUUGa---AGGUCGACcGCG- -5'
23760 5' -52.1 NC_005261.1 + 19056 0.7 0.865413
Target:  5'- gGCAGGgGUACgGGCUgCgCGGCUcucGGCGCg -3'
miRNA:   3'- -CGUCUgCAUG-UUGAaG-GUCGA---CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 14930 0.7 0.865413
Target:  5'- cCAGGau--CGACg-CCAGCUGGCGCu -3'
miRNA:   3'- cGUCUgcauGUUGaaGGUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 56253 0.7 0.880479
Target:  5'- cCGGGCGUggGCAcgcugcacggguACUgCgAGCUGGCGCc -3'
miRNA:   3'- cGUCUGCA--UGU------------UGAaGgUCGACCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.