miRNA display CGI


Results 61 - 80 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 5' -52.1 NC_005261.1 + 91975 0.7 0.880479
Target:  5'- cGCAGGcCGU-CAGCagguggUCCAGCaGGCGg -3'
miRNA:   3'- -CGUCU-GCAuGUUGa-----AGGUCGaCCGCg -5'
23760 5' -52.1 NC_005261.1 + 70091 0.7 0.880479
Target:  5'- cCAGACGUACGccgGCgagaAGCUcGGCGCc -3'
miRNA:   3'- cGUCUGCAUGU---UGaaggUCGA-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 56253 0.7 0.880479
Target:  5'- cCGGGCGUggGCAcgcugcacggguACUgCgAGCUGGCGCc -3'
miRNA:   3'- cGUCUGCA--UGU------------UGAaGgUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 134974 0.7 0.864635
Target:  5'- cGCAGACGgcgAgGACggggccgCCGGggcgcccCUGGCGCg -3'
miRNA:   3'- -CGUCUGCa--UgUUGaa-----GGUC-------GACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 14930 0.7 0.865413
Target:  5'- cCAGGau--CGACg-CCAGCUGGCGCu -3'
miRNA:   3'- cGUCUgcauGUUGaaGGUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 19056 0.7 0.865413
Target:  5'- gGCAGGgGUACgGGCUgCgCGGCUcucGGCGCg -3'
miRNA:   3'- -CGUCUgCAUG-UUGAaG-GUCGA---CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 114233 0.7 0.865413
Target:  5'- cGCGGGUGUACAGCgccaUUCAGCUGcUGCu -3'
miRNA:   3'- -CGUCUGCAUGUUGa---AGGUCGACcGCG- -5'
23760 5' -52.1 NC_005261.1 + 32185 0.7 0.865413
Target:  5'- uGCGGGCG-GCGcgcGCUgg-AGCUGGCGCc -3'
miRNA:   3'- -CGUCUGCaUGU---UGAaggUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 127632 0.7 0.873061
Target:  5'- cCGGACGcgacgGCGGCggcgCCGGggGGCGCg -3'
miRNA:   3'- cGUCUGCa----UGUUGaa--GGUCgaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 76032 0.7 0.876056
Target:  5'- cGCGGGCGccccgcgcgccauCAGCguggCCGGCgGGCGCc -3'
miRNA:   3'- -CGUCUGCau-----------GUUGaa--GGUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 62616 0.7 0.880479
Target:  5'- gGUAGGCGgccauCAGCg-CCAGCguguccGGCGCg -3'
miRNA:   3'- -CGUCUGCau---GUUGaaGGUCGa-----CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 61030 0.7 0.880479
Target:  5'- -gGGGCGgcaccGCGGCagCUGGCUGGUGCu -3'
miRNA:   3'- cgUCUGCa----UGUUGaaGGUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 4572 0.7 0.880479
Target:  5'- cGCGGGCGgg-----UCCGGCggGGCGCc -3'
miRNA:   3'- -CGUCUGCauguugaAGGUCGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 66086 0.69 0.907746
Target:  5'- aGCAGAUGcGCGGCcacgucaUCCAGCccGCGCa -3'
miRNA:   3'- -CGUCUGCaUGUUGa------AGGUCGacCGCG- -5'
23760 5' -52.1 NC_005261.1 + 15253 0.69 0.907746
Target:  5'- cGCAGugGgccGCGAUcgccCCGGC-GGCGCc -3'
miRNA:   3'- -CGUCugCa--UGUUGaa--GGUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 3879 0.69 0.907746
Target:  5'- aGCAcGGCGcGCAGCUcggCgAGCgcGGCGCg -3'
miRNA:   3'- -CGU-CUGCaUGUUGAa--GgUCGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 102519 0.69 0.901299
Target:  5'- cGCAGguccGCGUGCAGCUUggccgCCuGCggccccaGGCGCc -3'
miRNA:   3'- -CGUC----UGCAUGUUGAA-----GGuCGa------CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 69508 0.69 0.901299
Target:  5'- cGCcGGCGgcgGGCUgCCggAGCUGGCGCg -3'
miRNA:   3'- -CGuCUGCaugUUGAaGG--UCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 47733 0.69 0.901299
Target:  5'- gGCGGACac-CAGCagCCcGCUGGCGUc -3'
miRNA:   3'- -CGUCUGcauGUUGaaGGuCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 77199 0.69 0.907746
Target:  5'- uGCAGGCGaGCgcgGugUUCCcGCUGGC-Cg -3'
miRNA:   3'- -CGUCUGCaUG---UugAAGGuCGACCGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.