miRNA display CGI


Results 21 - 40 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 5' -52.1 NC_005261.1 + 1461 0.73 0.738386
Target:  5'- --cGGCGUGCGGC-UCCAGCa-GCGCg -3'
miRNA:   3'- cguCUGCAUGUUGaAGGUCGacCGCG- -5'
23760 5' -52.1 NC_005261.1 + 101696 0.73 0.738386
Target:  5'- aGCGGGCGUGgucgaAGCgcUCCAGCUGcgccaGCGCg -3'
miRNA:   3'- -CGUCUGCAUg----UUGa-AGGUCGAC-----CGCG- -5'
23760 5' -52.1 NC_005261.1 + 7882 0.73 0.748423
Target:  5'- gGCAG-CGaGCGGCUcuguUCCGGCgcGGCGCc -3'
miRNA:   3'- -CGUCuGCaUGUUGA----AGGUCGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 59797 0.73 0.748423
Target:  5'- gGCGGGCG-GCAGg--CCGGCgUGGCGCc -3'
miRNA:   3'- -CGUCUGCaUGUUgaaGGUCG-ACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 5091 0.73 0.757362
Target:  5'- cGCGGccaccauGCGccACAGCUccgCCAGCUcGGCGCg -3'
miRNA:   3'- -CGUC-------UGCa-UGUUGAa--GGUCGA-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 4809 0.73 0.75835
Target:  5'- --cGGCGU-CAACUUCCuccGCguugGGCGCa -3'
miRNA:   3'- cguCUGCAuGUUGAAGGu--CGa---CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 138121 0.73 0.75835
Target:  5'- cGgGGACGggggccGCGACggCCGGCgggaUGGCGCg -3'
miRNA:   3'- -CgUCUGCa-----UGUUGaaGGUCG----ACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 450 0.73 0.75835
Target:  5'- cGgGGACGggggccGCGACggCCGGCgggaUGGCGCg -3'
miRNA:   3'- -CgUCUGCa-----UGUUGaaGGUCG----ACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 74710 0.72 0.769132
Target:  5'- cGCGGGCGcggaaccgggccgcgGCAGCggCCGcggacaaccuGCUGGCGCg -3'
miRNA:   3'- -CGUCUGCa--------------UGUUGaaGGU----------CGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 48275 0.72 0.775912
Target:  5'- cGgGGACGcGCGcaagcgccGCUUCCAGCgaggccucggggGGCGCg -3'
miRNA:   3'- -CgUCUGCaUGU--------UGAAGGUCGa-----------CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 118111 0.72 0.777836
Target:  5'- cGCAGACGcUGC-GCcgCCGGCUcGCGCc -3'
miRNA:   3'- -CGUCUGC-AUGuUGaaGGUCGAcCGCG- -5'
23760 5' -52.1 NC_005261.1 + 17820 0.72 0.777836
Target:  5'- uGCGGGCGuUGC-AC-UCCAGCgaGGCGUu -3'
miRNA:   3'- -CGUCUGC-AUGuUGaAGGUCGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 68702 0.72 0.785479
Target:  5'- cGCGGACG-ACGGCggcgCCGGCccucacgcggcgGGCGCc -3'
miRNA:   3'- -CGUCUGCaUGUUGaa--GGUCGa-----------CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 29907 0.72 0.796766
Target:  5'- gGCAGcgcGCGaGCGGCUgcgCgAGCUGGCGg -3'
miRNA:   3'- -CGUC---UGCaUGUUGAa--GgUCGACCGCg -5'
23760 5' -52.1 NC_005261.1 + 63048 0.72 0.805997
Target:  5'- gGCGGuCGcGCAGCagcgCCGcgucGCUGGCGCa -3'
miRNA:   3'- -CGUCuGCaUGUUGaa--GGU----CGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 55404 0.71 0.823064
Target:  5'- -gAGAC-UGCAucuacgcGCgcgCCGGCUGGCGCc -3'
miRNA:   3'- cgUCUGcAUGU-------UGaa-GGUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 117401 0.71 0.823945
Target:  5'- -gGGGCGccCGACUUUCGGCUGGaGCu -3'
miRNA:   3'- cgUCUGCauGUUGAAGGUCGACCgCG- -5'
23760 5' -52.1 NC_005261.1 + 29547 0.71 0.823945
Target:  5'- cGCGGGCccg-GACcUgCAGCUGGCGCg -3'
miRNA:   3'- -CGUCUGcaugUUGaAgGUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 129190 0.71 0.823945
Target:  5'- cGCAGgccagcGCGUggcGCAGCUgcUUCuGCUGGUGCg -3'
miRNA:   3'- -CGUC------UGCA---UGUUGA--AGGuCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 13690 0.71 0.823945
Target:  5'- cGCGGGCGUGgGGCggggCgGGCUGGgGg -3'
miRNA:   3'- -CGUCUGCAUgUUGaa--GgUCGACCgCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.