miRNA display CGI


Results 61 - 80 of 198 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 5' -52.1 NC_005261.1 + 56253 0.7 0.880479
Target:  5'- cCGGGCGUggGCAcgcugcacggguACUgCgAGCUGGCGCc -3'
miRNA:   3'- cGUCUGCA--UGU------------UGAaGgUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 4572 0.7 0.880479
Target:  5'- cGCGGGCGgg-----UCCGGCggGGCGCc -3'
miRNA:   3'- -CGUCUGCauguugaAGGUCGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 61030 0.7 0.880479
Target:  5'- -gGGGCGgcaccGCGGCagCUGGCUGGUGCu -3'
miRNA:   3'- cgUCUGCa----UGUUGaaGGUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 62616 0.7 0.880479
Target:  5'- gGUAGGCGgccauCAGCg-CCAGCguguccGGCGCg -3'
miRNA:   3'- -CGUCUGCau---GUUGaaGGUCGa-----CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 83567 0.7 0.886954
Target:  5'- gGCGGGCGUgcccgcggcgcccGCGGCcgCCAGCa-GCGCg -3'
miRNA:   3'- -CGUCUGCA-------------UGUUGaaGGUCGacCGCG- -5'
23760 5' -52.1 NC_005261.1 + 127487 0.7 0.887661
Target:  5'- cCAGACGcugGCGGCUgCCuGCcgGGCGUa -3'
miRNA:   3'- cGUCUGCa--UGUUGAaGGuCGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 118891 0.7 0.887661
Target:  5'- cGCGGGCGcgcugguggccUGCGuCUgggUCCGGCgccgcgGGCGCg -3'
miRNA:   3'- -CGUCUGC-----------AUGUuGA---AGGUCGa-----CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 117720 0.7 0.887661
Target:  5'- cGCGGGCccGCaAGCggCCGcgcGCUGGCGCc -3'
miRNA:   3'- -CGUCUGcaUG-UUGaaGGU---CGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 84629 0.7 0.887661
Target:  5'- cGCGGAgCGccuccaccaGCGugUUgucCCGGCUGGCGCc -3'
miRNA:   3'- -CGUCU-GCa--------UGUugAA---GGUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 33801 0.7 0.887661
Target:  5'- cGCGGGCGgcgggcuugucuUugGGCggCCGGggGGCGCg -3'
miRNA:   3'- -CGUCUGC------------AugUUGaaGGUCgaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 3778 0.7 0.887661
Target:  5'- gGCAGGCcgcagcGCAGCgguccgCCAGCUcGCGCa -3'
miRNA:   3'- -CGUCUGca----UGUUGaa----GGUCGAcCGCG- -5'
23760 5' -52.1 NC_005261.1 + 135722 0.7 0.894603
Target:  5'- cCAGcCuGUACAugUUCgugauGCUGGCGCg -3'
miRNA:   3'- cGUCuG-CAUGUugAAGgu---CGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 102362 0.7 0.894603
Target:  5'- gGCGGAgCGcgccuCAACgcgcUCCAGCgcGGCGCg -3'
miRNA:   3'- -CGUCU-GCau---GUUGa---AGGUCGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 136483 0.69 0.901299
Target:  5'- cGCGGGCa-GCAGCgagCAGCUcGGCGCc -3'
miRNA:   3'- -CGUCUGcaUGUUGaagGUCGA-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 47733 0.69 0.901299
Target:  5'- gGCGGACac-CAGCagCCcGCUGGCGUc -3'
miRNA:   3'- -CGUCUGcauGUUGaaGGuCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 69508 0.69 0.901299
Target:  5'- cGCcGGCGgcgGGCUgCCggAGCUGGCGCg -3'
miRNA:   3'- -CGuCUGCaugUUGAaGG--UCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 102519 0.69 0.901299
Target:  5'- cGCAGguccGCGUGCAGCUUggccgCCuGCggccccaGGCGCc -3'
miRNA:   3'- -CGUC----UGCAUGUUGAA-----GGuCGa------CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 15253 0.69 0.907746
Target:  5'- cGCAGugGgccGCGAUcgccCCGGC-GGCGCc -3'
miRNA:   3'- -CGUCugCa--UGUUGaa--GGUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 66086 0.69 0.907746
Target:  5'- aGCAGAUGcGCGGCcacgucaUCCAGCccGCGCa -3'
miRNA:   3'- -CGUCUGCaUGUUGa------AGGUCGacCGCG- -5'
23760 5' -52.1 NC_005261.1 + 77199 0.69 0.907746
Target:  5'- uGCAGGCGaGCgcgGugUUCCcGCUGGC-Cg -3'
miRNA:   3'- -CGUCUGCaUG---UugAAGGuCGACCGcG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.