miRNA display CGI


Results 41 - 60 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 5' -52.1 NC_005261.1 + 30323 0.67 0.96868
Target:  5'- gGCGGAaGUGcCGGCg--CGGCUGGCGg -3'
miRNA:   3'- -CGUCUgCAU-GUUGaagGUCGACCGCg -5'
23760 5' -52.1 NC_005261.1 + 31321 0.68 0.948458
Target:  5'- cGCGGGCGcGCucGCcgCCAGCgcgccgcugcggcGGCGCg -3'
miRNA:   3'- -CGUCUGCaUGu-UGaaGGUCGa------------CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 32024 0.66 0.983686
Target:  5'- gGCAGcGCGUGCuGCcg-CGGCUcgacgGGCGCa -3'
miRNA:   3'- -CGUC-UGCAUGuUGaagGUCGA-----CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 32185 0.7 0.865413
Target:  5'- uGCGGGCG-GCGcgcGCUgg-AGCUGGCGCc -3'
miRNA:   3'- -CGUCUGCaUGU---UGAaggUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 33801 0.7 0.887661
Target:  5'- cGCGGGCGgcgggcuugucuUugGGCggCCGGggGGCGCg -3'
miRNA:   3'- -CGUCUGC------------AugUUGaaGGUCgaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 34386 0.68 0.936183
Target:  5'- cGCAGACGcggcGCAGgaguuuauCgaCCGGgUGGCGCg -3'
miRNA:   3'- -CGUCUGCa---UGUU--------GaaGGUCgACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 35012 0.68 0.936183
Target:  5'- uGCGGuGCGgcCGGCgUCUcggucGCUGGCGCg -3'
miRNA:   3'- -CGUC-UGCauGUUGaAGGu----CGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 35920 0.67 0.961991
Target:  5'- cGCGGccccGCGccGCAGC--CCAGCgGGCGCc -3'
miRNA:   3'- -CGUC----UGCa-UGUUGaaGGUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 36737 0.75 0.64482
Target:  5'- cGCGG-CGguCAGCUacccaggCCAGCUGGCGCc -3'
miRNA:   3'- -CGUCuGCauGUUGAa------GGUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 36927 0.71 0.823945
Target:  5'- -gGGACGUACucCggggCCcugcGCUGGCGCa -3'
miRNA:   3'- cgUCUGCAUGuuGaa--GGu---CGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 38987 0.66 0.97169
Target:  5'- uGCAGAUGUuucuGCUgugCCAGCgcgcccacGCGCa -3'
miRNA:   3'- -CGUCUGCAugu-UGAa--GGUCGac------CGCG- -5'
23760 5' -52.1 NC_005261.1 + 39841 0.66 0.977075
Target:  5'- uGguGACGUGgAugU-CCcGCcgGGCGCc -3'
miRNA:   3'- -CguCUGCAUgUugAaGGuCGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 39882 0.78 0.469999
Target:  5'- aGCAGgccgcGCGcGCGGCUgugCAGCUGGCGCg -3'
miRNA:   3'- -CGUC-----UGCaUGUUGAag-GUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 41117 0.71 0.841148
Target:  5'- gGCGGGCccgaGC-GCUUCCuGCgUGGCGCg -3'
miRNA:   3'- -CGUCUGca--UGuUGAAGGuCG-ACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 42808 0.71 0.832644
Target:  5'- uGCAGACGUccGCGGCcgcgCCGGCcGGaGCa -3'
miRNA:   3'- -CGUCUGCA--UGUUGaa--GGUCGaCCgCG- -5'
23760 5' -52.1 NC_005261.1 + 43170 0.67 0.954369
Target:  5'- cGCGGcGCGaUACGGCgccgCCGGCgaggcagaggUGGUGCg -3'
miRNA:   3'- -CGUC-UGC-AUGUUGaa--GGUCG----------ACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 43555 0.66 0.97169
Target:  5'- -gAGAUccucUACAACUUCCgcgAGC-GGCGCu -3'
miRNA:   3'- cgUCUGc---AUGUUGAAGG---UCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 43992 0.68 0.950196
Target:  5'- uCGGACGUGgacaccuccCAGC--CCGGCUucGGCGCg -3'
miRNA:   3'- cGUCUGCAU---------GUUGaaGGUCGA--CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 44051 0.67 0.967734
Target:  5'- cGCGGGCGgGCAGCagauccaggacgccUUCCGgGCguccgUGGUGCa -3'
miRNA:   3'- -CGUCUGCaUGUUG--------------AAGGU-CG-----ACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 44727 0.75 0.655386
Target:  5'- cGCAgGGCGcUGCAGCUgggCCccgAGCUGcGCGCg -3'
miRNA:   3'- -CGU-CUGC-AUGUUGAa--GG---UCGAC-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.