miRNA display CGI


Results 61 - 80 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 5' -52.1 NC_005261.1 + 46478 0.66 0.97169
Target:  5'- cGCAG--GUGCAGCUcggcgcccUCC-GCggGGCGCa -3'
miRNA:   3'- -CGUCugCAUGUUGA--------AGGuCGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 47733 0.69 0.901299
Target:  5'- gGCGGACac-CAGCagCCcGCUGGCGUc -3'
miRNA:   3'- -CGUCUGcauGUUGaaGGuCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 48275 0.72 0.775912
Target:  5'- cGgGGACGcGCGcaagcgccGCUUCCAGCgaggccucggggGGCGCg -3'
miRNA:   3'- -CgUCUGCaUGU--------UGAAGGUCGa-----------CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 48427 0.77 0.499466
Target:  5'- aGCAGGCgGUACAGC-UCgCGGUgcgUGGCGCg -3'
miRNA:   3'- -CGUCUG-CAUGUUGaAG-GUCG---ACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 48711 0.71 0.848628
Target:  5'- gGCGGGCGUgauguugcaacggGCAAUcUCCAGCaGGCa- -3'
miRNA:   3'- -CGUCUGCA-------------UGUUGaAGGUCGaCCGcg -5'
23760 5' -52.1 NC_005261.1 + 50022 0.66 0.979466
Target:  5'- cGCGGGCGccCAGCcgCCGcGCgacGGUGCa -3'
miRNA:   3'- -CGUCUGCauGUUGaaGGU-CGa--CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 50811 0.66 0.983686
Target:  5'- cGCcauGACGggcuccgcGCGGCUUggcgCCgcgAGCUGGCGCc -3'
miRNA:   3'- -CGu--CUGCa-------UGUUGAA----GG---UCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 51739 0.68 0.945776
Target:  5'- cGCAGGCccccgggcUGCcGCUggCCgugaAGCUGGCGCu -3'
miRNA:   3'- -CGUCUGc-------AUGuUGAa-GG----UCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 52987 0.76 0.602539
Target:  5'- gGCAGGCGgggGCGGCgcCCAgGCgucGGCGCa -3'
miRNA:   3'- -CGUCUGCa--UGUUGaaGGU-CGa--CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 53704 0.69 0.925573
Target:  5'- cCGGGCGccGCGcgccGCggCCAGCUgcGGCGCg -3'
miRNA:   3'- cGUCUGCa-UGU----UGaaGGUCGA--CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 54298 0.66 0.971105
Target:  5'- cGCGGGCGccgguuaacacCAGC-UCCAGCaaGGCGUg -3'
miRNA:   3'- -CGUCUGCau---------GUUGaAGGUCGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 54495 0.66 0.974486
Target:  5'- gGCAGGCGcaaacGCAgGCgcccUCCGGCgacGGCGUc -3'
miRNA:   3'- -CGUCUGCa----UGU-UGa---AGGUCGa--CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 55404 0.71 0.823064
Target:  5'- -gAGAC-UGCAucuacgcGCgcgCCGGCUGGCGCc -3'
miRNA:   3'- cgUCUGcAUGU-------UGaa-GGUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 55906 0.67 0.967414
Target:  5'- cCGG-UGUGCuuCUUCCAGCcgcagccgccgccGGCGCg -3'
miRNA:   3'- cGUCuGCAUGuuGAAGGUCGa------------CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 56074 0.66 0.981667
Target:  5'- -uGGGCGaGCAguccgcucgcuACUUCCAGCggcuccuGCGCg -3'
miRNA:   3'- cgUCUGCaUGU-----------UGAAGGUCGac-----CGCG- -5'
23760 5' -52.1 NC_005261.1 + 56253 0.7 0.880479
Target:  5'- cCGGGCGUggGCAcgcugcacggguACUgCgAGCUGGCGCc -3'
miRNA:   3'- cGUCUGCA--UGU------------UGAaGgUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 56618 0.66 0.983296
Target:  5'- cGCGcGCGUGgAGCcccCCAGCgaccagacgcggGGCGCg -3'
miRNA:   3'- -CGUcUGCAUgUUGaa-GGUCGa-----------CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 57305 0.76 0.575223
Target:  5'- cGCGcGACGUccucguccaugacucGCAGCUgCCAGCcGGCGCc -3'
miRNA:   3'- -CGU-CUGCA---------------UGUUGAaGGUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 58672 0.71 0.823945
Target:  5'- cGCGGugGUACGGCaggaggCCcgGGCcgucagGGCGCg -3'
miRNA:   3'- -CGUCugCAUGUUGaa----GG--UCGa-----CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 59109 0.66 0.973669
Target:  5'- cGCAGGCGcGCGcgaGCUcCCcggccaccgacucaGGCcGGCGCg -3'
miRNA:   3'- -CGUCUGCaUGU---UGAaGG--------------UCGaCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.