miRNA display CGI


Results 81 - 100 of 198 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 5' -52.1 NC_005261.1 + 59440 0.67 0.958299
Target:  5'- gGCAGGCGccgGCAGCagCgCGGCcgcGGCGUc -3'
miRNA:   3'- -CGUCUGCa--UGUUGaaG-GUCGa--CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 59797 0.73 0.748423
Target:  5'- gGCGGGCG-GCAGg--CCGGCgUGGCGCc -3'
miRNA:   3'- -CGUCUGCaUGUUgaaGGUCG-ACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 61030 0.7 0.880479
Target:  5'- -gGGGCGgcaccGCGGCagCUGGCUGGUGCu -3'
miRNA:   3'- cgUCUGCa----UGUUGaaGGUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 62616 0.7 0.880479
Target:  5'- gGUAGGCGgccauCAGCg-CCAGCguguccGGCGCg -3'
miRNA:   3'- -CGUCUGCau---GUUGaaGGUCGa-----CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 63048 0.72 0.805997
Target:  5'- gGCGGuCGcGCAGCagcgCCGcgucGCUGGCGCa -3'
miRNA:   3'- -CGUCuGCaUGUUGaa--GGU----CGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 63952 0.66 0.97169
Target:  5'- uGCAGcccCGUGCG-----CAGCUGGUGCg -3'
miRNA:   3'- -CGUCu--GCAUGUugaagGUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 64277 0.75 0.655386
Target:  5'- cGCcGugGUGCAGCgccgcgUCCAGC-GuGCGCa -3'
miRNA:   3'- -CGuCugCAUGUUGa-----AGGUCGaC-CGCG- -5'
23760 5' -52.1 NC_005261.1 + 64754 0.69 0.925573
Target:  5'- uGCGGAaGUugGcCUcggCCAGCUcgcGGCGCg -3'
miRNA:   3'- -CGUCUgCAugUuGAa--GGUCGA---CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 64920 0.66 0.981667
Target:  5'- aGCGcGGCGUGCuccuGCUcgccgcCCAGg-GGCGCg -3'
miRNA:   3'- -CGU-CUGCAUGu---UGAa-----GGUCgaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 64986 0.67 0.961991
Target:  5'- cGCAGcGCGUGCAGgUgcUCCAGgaGGUc- -3'
miRNA:   3'- -CGUC-UGCAUGUUgA--AGGUCgaCCGcg -5'
23760 5' -52.1 NC_005261.1 + 66086 0.69 0.907746
Target:  5'- aGCAGAUGcGCGGCcacgucaUCCAGCccGCGCa -3'
miRNA:   3'- -CGUCUGCaUGUUGa------AGGUCGacCGCG- -5'
23760 5' -52.1 NC_005261.1 + 68515 0.74 0.686925
Target:  5'- uGCAGGCGUGCcug--CCGGCgccgccGGCGCc -3'
miRNA:   3'- -CGUCUGCAUGuugaaGGUCGa-----CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 68702 0.72 0.785479
Target:  5'- cGCGGACG-ACGGCggcgCCGGCccucacgcggcgGGCGCc -3'
miRNA:   3'- -CGUCUGCaUGUUGaa--GGUCGa-----------CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 68769 0.66 0.983686
Target:  5'- cGCGGAgccgcCGUGuCgAACUUCguGCaGGUGCg -3'
miRNA:   3'- -CGUCU-----GCAU-G-UUGAAGguCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 69002 0.69 0.913943
Target:  5'- cGCGGGCGccGCGGCUUC--GUUGGCGa -3'
miRNA:   3'- -CGUCUGCa-UGUUGAAGguCGACCGCg -5'
23760 5' -52.1 NC_005261.1 + 69196 0.71 0.841148
Target:  5'- cGCGGACGcggccaACGACguccUCCgggAGCUGuGCGCg -3'
miRNA:   3'- -CGUCUGCa-----UGUUGa---AGG---UCGAC-CGCG- -5'
23760 5' -52.1 NC_005261.1 + 69451 0.69 0.913943
Target:  5'- cGCGGACGagcUGCGGCgcgucgagggCCAcauccgcgcgauGCUGGUGCa -3'
miRNA:   3'- -CGUCUGC---AUGUUGaa--------GGU------------CGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 69508 0.69 0.901299
Target:  5'- cGCcGGCGgcgGGCUgCCggAGCUGGCGCg -3'
miRNA:   3'- -CGuCUGCaugUUGAaGG--UCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 70091 0.7 0.880479
Target:  5'- cCAGACGUACGccgGCgagaAGCUcGGCGCc -3'
miRNA:   3'- cGUCUGCAUGU---UGaaggUCGA-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 70791 0.68 0.950196
Target:  5'- -aAGGCGUccaGCAGCUcaaaguccgcgCCGGCggccccgGGCGCg -3'
miRNA:   3'- cgUCUGCA---UGUUGAa----------GGUCGa------CCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.