miRNA display CGI


Results 21 - 40 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 5' -52.1 NC_005261.1 + 127433 0.66 0.977075
Target:  5'- cGCAGACuu-CAGCaUUCGGUccaGGCGCu -3'
miRNA:   3'- -CGUCUGcauGUUGaAGGUCGa--CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 127288 0.68 0.945776
Target:  5'- cGCGGGg--GCAGCccuccccgCCGGCUGGCGg -3'
miRNA:   3'- -CGUCUgcaUGUUGaa------GGUCGACCGCg -5'
23760 5' -52.1 NC_005261.1 + 126034 0.68 0.941106
Target:  5'- cGCGGccgcGCGUACGAgUgcUCCcGCUccGGCGCc -3'
miRNA:   3'- -CGUC----UGCAUGUUgA--AGGuCGA--CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 125909 0.67 0.957145
Target:  5'- cCAGAUGUgugGCGggGCUcgCCAcgcgcacgguagccGCUGGCGCg -3'
miRNA:   3'- cGUCUGCA---UGU--UGAa-GGU--------------CGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 125389 0.66 0.979466
Target:  5'- aCGGguGCGUGCGguACgUUCCGGagcGGCGCg -3'
miRNA:   3'- cGUC--UGCAUGU--UG-AAGGUCga-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 124603 0.69 0.907746
Target:  5'- gGCGG-CGUGCGGCauagcgcgUCCAGCggcaucuGCGCg -3'
miRNA:   3'- -CGUCuGCAUGUUGa-------AGGUCGac-----CGCG- -5'
23760 5' -52.1 NC_005261.1 + 122308 0.7 0.880479
Target:  5'- cGCAGGCG-ACGcccgggccgGCggUCAGgUGGCGCu -3'
miRNA:   3'- -CGUCUGCaUGU---------UGaaGGUCgACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 121773 0.69 0.911494
Target:  5'- cGCGGugGggugGCcGCggCCGGCgggcugggcagggGGCGCg -3'
miRNA:   3'- -CGUCugCa---UGuUGaaGGUCGa------------CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 119632 0.69 0.925573
Target:  5'- uGCGG-CGUggccgACAACgccaCCGGC-GGCGCg -3'
miRNA:   3'- -CGUCuGCA-----UGUUGaa--GGUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 119390 0.66 0.974486
Target:  5'- --cGACGaACGACggugCCGGCacccucGGCGCg -3'
miRNA:   3'- cguCUGCaUGUUGaa--GGUCGa-----CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 118891 0.7 0.887661
Target:  5'- cGCGGGCGcgcugguggccUGCGuCUgggUCCGGCgccgcgGGCGCg -3'
miRNA:   3'- -CGUCUGC-----------AUGUuGA---AGGUCGa-----CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 118406 0.66 0.97169
Target:  5'- cGCGGGCGccGCAGCcgcgCUGGCUGuCGCc -3'
miRNA:   3'- -CGUCUGCa-UGUUGaa--GGUCGACcGCG- -5'
23760 5' -52.1 NC_005261.1 + 118111 0.72 0.777836
Target:  5'- cGCAGACGcUGC-GCcgCCGGCUcGCGCc -3'
miRNA:   3'- -CGUCUGC-AUGuUGaaGGUCGAcCGCG- -5'
23760 5' -52.1 NC_005261.1 + 117720 0.7 0.887661
Target:  5'- cGCGGGCccGCaAGCggCCGcgcGCUGGCGCc -3'
miRNA:   3'- -CGUCUGcaUG-UUGaaGGU---CGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 117401 0.71 0.823945
Target:  5'- -gGGGCGccCGACUUUCGGCUGGaGCu -3'
miRNA:   3'- cgUCUGCauGUUGAAGGUCGACCgCG- -5'
23760 5' -52.1 NC_005261.1 + 114233 0.7 0.865413
Target:  5'- cGCGGGUGUACAGCgccaUUCAGCUGcUGCu -3'
miRNA:   3'- -CGUCUGCAUGUUGa---AGGUCGACcGCG- -5'
23760 5' -52.1 NC_005261.1 + 114059 0.66 0.974486
Target:  5'- -aGGACGUggcGCGGCU--CAGC-GGCGCc -3'
miRNA:   3'- cgUCUGCA---UGUUGAagGUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 113904 0.67 0.96868
Target:  5'- gGCGGGCGcgAUGGCcgaggCAGCgGGCGCg -3'
miRNA:   3'- -CGUCUGCa-UGUUGaag--GUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 112065 0.68 0.945776
Target:  5'- uCGGGCGUGCccucgUCGGCgagGGCGCc -3'
miRNA:   3'- cGUCUGCAUGuugaaGGUCGa--CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 111440 0.66 0.983686
Target:  5'- -gAGACGgACGACcggCgAGCcgGGCGCc -3'
miRNA:   3'- cgUCUGCaUGUUGaa-GgUCGa-CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.