miRNA display CGI


Results 41 - 60 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 5' -52.1 NC_005261.1 + 110336 0.66 0.980146
Target:  5'- cGCGGACGcGCugcgcgcgcaccuGAUUUCCAacucgggcgaccgccGCaUGGCGCu -3'
miRNA:   3'- -CGUCUGCaUG-------------UUGAAGGU---------------CG-ACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 110210 0.66 0.983686
Target:  5'- gGCcuGGCGcaaccucgGCGACgccUCCAGCgugggcGGCGCg -3'
miRNA:   3'- -CGu-CUGCa-------UGUUGa--AGGUCGa-----CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 108882 0.67 0.958299
Target:  5'- gGUGGACG-ACGgccgcGCUgcccgCCGGCgagcggGGCGCg -3'
miRNA:   3'- -CGUCUGCaUGU-----UGAa----GGUCGa-----CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 108761 0.67 0.954369
Target:  5'- cGCGGcgcgccgcgccACGgcaccauggGCAcCUUCCAGUUGGCaGCg -3'
miRNA:   3'- -CGUC-----------UGCa--------UGUuGAAGGUCGACCG-CG- -5'
23760 5' -52.1 NC_005261.1 + 108196 0.71 0.85754
Target:  5'- cCGGGCGcgAgAGCUgcgCCAGCacGGCGCg -3'
miRNA:   3'- cGUCUGCa-UgUUGAa--GGUCGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 107257 0.67 0.96868
Target:  5'- cGCGGGCGcGCGGgcaCgGGCgGGCGCg -3'
miRNA:   3'- -CGUCUGCaUGUUgaaGgUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 106093 0.66 0.983686
Target:  5'- aGCGG-CGaucGCGACgucggCCGGCgucgccGGCGCg -3'
miRNA:   3'- -CGUCuGCa--UGUUGaa---GGUCGa-----CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 105275 0.75 0.613095
Target:  5'- gGCGGGCG-GCAGCg-CCGGCgagcccgGGCGCg -3'
miRNA:   3'- -CGUCUGCaUGUUGaaGGUCGa------CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 104324 0.66 0.979466
Target:  5'- cGCGGACGcGC-GCgUCCAGC-GGCcgGCc -3'
miRNA:   3'- -CGUCUGCaUGuUGaAGGUCGaCCG--CG- -5'
23760 5' -52.1 NC_005261.1 + 104194 0.66 0.979466
Target:  5'- uCGGGCGggACGGCgUCCAggcGCUcGCGCg -3'
miRNA:   3'- cGUCUGCa-UGUUGaAGGU---CGAcCGCG- -5'
23760 5' -52.1 NC_005261.1 + 103452 0.74 0.691103
Target:  5'- cGCGGuCGgccGCcgcgcccgucgccagGGCgUCCAGCUGGCGCa -3'
miRNA:   3'- -CGUCuGCa--UG---------------UUGaAGGUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 102519 0.69 0.901299
Target:  5'- cGCAGguccGCGUGCAGCUUggccgCCuGCggccccaGGCGCc -3'
miRNA:   3'- -CGUC----UGCAUGUUGAA-----GGuCGa------CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 102362 0.7 0.894603
Target:  5'- gGCGGAgCGcgccuCAACgcgcUCCAGCgcGGCGCg -3'
miRNA:   3'- -CGUCU-GCau---GUUGa---AGGUCGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 102326 0.69 0.925573
Target:  5'- cGCGG-CGcGCAGCcgcgCCAGCUcGGcCGCg -3'
miRNA:   3'- -CGUCuGCaUGUUGaa--GGUCGA-CC-GCG- -5'
23760 5' -52.1 NC_005261.1 + 102149 0.68 0.936183
Target:  5'- cGC-GAUGUcgcGCAGCUgcgCCAGCggcGGCGg -3'
miRNA:   3'- -CGuCUGCA---UGUUGAa--GGUCGa--CCGCg -5'
23760 5' -52.1 NC_005261.1 + 101696 0.73 0.738386
Target:  5'- aGCGGGCGUGgucgaAGCgcUCCAGCUGcgccaGCGCg -3'
miRNA:   3'- -CGUCUGCAUg----UUGa-AGGUCGAC-----CGCG- -5'
23760 5' -52.1 NC_005261.1 + 100793 0.68 0.936183
Target:  5'- cGCAGGCcaGCAGgUcCCGGaagGGCGCg -3'
miRNA:   3'- -CGUCUGcaUGUUgAaGGUCga-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 100214 0.68 0.931005
Target:  5'- aGCAGccccGCGUAgAGCUcggCCAccGCcgGGCGCa -3'
miRNA:   3'- -CGUC----UGCAUgUUGAa--GGU--CGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 98839 0.69 0.925573
Target:  5'- gGUGGGCGUACAgcgggucgccGCUUgCGGC-GGCGa -3'
miRNA:   3'- -CGUCUGCAUGU----------UGAAgGUCGaCCGCg -5'
23760 5' -52.1 NC_005261.1 + 98358 0.66 0.983686
Target:  5'- gGCGGGgGUgggcGCGGgcUCUGGCgGGCGCa -3'
miRNA:   3'- -CGUCUgCA----UGUUgaAGGUCGaCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.