miRNA display CGI


Results 61 - 80 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 5' -52.1 NC_005261.1 + 98313 0.69 0.913943
Target:  5'- gGCGGGCGcc--GCcgCCAGCggcGGCGCg -3'
miRNA:   3'- -CGUCUGCauguUGaaGGUCGa--CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 97824 0.69 0.913943
Target:  5'- cGCAGACGgcgGCAaaaACgggggCGGCgGGCGCc -3'
miRNA:   3'- -CGUCUGCa--UGU---UGaag--GUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 97120 0.66 0.983686
Target:  5'- cGCGGcCGgagGCGccGCggCCAcgcucggaggcGCUGGCGCc -3'
miRNA:   3'- -CGUCuGCa--UGU--UGaaGGU-----------CGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 96248 0.71 0.831782
Target:  5'- cGCgGGugGUGCAGCUcccccUCgAguacgaggacgacGCUGGCGCg -3'
miRNA:   3'- -CG-UCugCAUGUUGA-----AGgU-------------CGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 95308 0.68 0.948458
Target:  5'- cGCAGACGgacUGCGACcccuacguccgggUCCAGaacacgGGCGUg -3'
miRNA:   3'- -CGUCUGC---AUGUUGa------------AGGUCga----CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 94344 0.67 0.961991
Target:  5'- gGUAGGCGU-CGAUcgUCCGGCacacaGCGCa -3'
miRNA:   3'- -CGUCUGCAuGUUGa-AGGUCGac---CGCG- -5'
23760 5' -52.1 NC_005261.1 + 93674 0.76 0.602539
Target:  5'- cGCGGGCG-GCGGCg-CCGGCggGGCGCc -3'
miRNA:   3'- -CGUCUGCaUGUUGaaGGUCGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 93348 0.68 0.941106
Target:  5'- cGCAGcGCGcGCAGCgcgcgCCAGUgcgccGGCGUg -3'
miRNA:   3'- -CGUC-UGCaUGUUGaa---GGUCGa----CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 92818 0.68 0.933107
Target:  5'- cGCGGGCGUGgGACcgcgcgcagagUCCAGCUccagcucccgggcccGGcCGCa -3'
miRNA:   3'- -CGUCUGCAUgUUGa----------AGGUCGA---------------CC-GCG- -5'
23760 5' -52.1 NC_005261.1 + 91975 0.7 0.880479
Target:  5'- cGCAGGcCGU-CAGCagguggUCCAGCaGGCGg -3'
miRNA:   3'- -CGUCU-GCAuGUUGa-----AGGUCGaCCGCg -5'
23760 5' -52.1 NC_005261.1 + 91735 0.69 0.907746
Target:  5'- gGCGGGCuucGCGGCgcucacgCCGGC-GGCGCa -3'
miRNA:   3'- -CGUCUGca-UGUUGaa-----GGUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 89028 0.67 0.958299
Target:  5'- cGUGGACGUgACGacgcGCUUCCuGCUGGaCa- -3'
miRNA:   3'- -CGUCUGCA-UGU----UGAAGGuCGACC-Gcg -5'
23760 5' -52.1 NC_005261.1 + 88724 0.66 0.97169
Target:  5'- uGCGGG-GUgcGCGAUgagggCCAGCUGGUGg -3'
miRNA:   3'- -CGUCUgCA--UGUUGaa---GGUCGACCGCg -5'
23760 5' -52.1 NC_005261.1 + 88167 0.68 0.950196
Target:  5'- cGCAGcCGggccgggGCGACg-CCGGC-GGCGCc -3'
miRNA:   3'- -CGUCuGCa------UGUUGaaGGUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 87746 0.77 0.499466
Target:  5'- cGCAGACGUACAcgaaGCccgCgGGCccUGGCGCg -3'
miRNA:   3'- -CGUCUGCAUGU----UGaa-GgUCG--ACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 87470 0.76 0.550264
Target:  5'- cGCAGGCGcGCGucagguucggcGCggCCGuGCUGGCGCg -3'
miRNA:   3'- -CGUCUGCaUGU-----------UGaaGGU-CGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 85284 0.66 0.983686
Target:  5'- uUAGGCGUcgggcucccggGCGGCUUCCcGUUGGgGa -3'
miRNA:   3'- cGUCUGCA-----------UGUUGAAGGuCGACCgCg -5'
23760 5' -52.1 NC_005261.1 + 84629 0.7 0.887661
Target:  5'- cGCGGAgCGccuccaccaGCGugUUgucCCGGCUGGCGCc -3'
miRNA:   3'- -CGUCU-GCa--------UGUugAA---GGUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 83567 0.7 0.886954
Target:  5'- gGCGGGCGUgcccgcggcgcccGCGGCcgCCAGCa-GCGCg -3'
miRNA:   3'- -CGUCUGCA-------------UGUUGaaGGUCGacCGCG- -5'
23760 5' -52.1 NC_005261.1 + 83306 0.73 0.738386
Target:  5'- cGCGGGguCGUGCAGC-UCgGGC-GGCGCc -3'
miRNA:   3'- -CGUCU--GCAUGUUGaAGgUCGaCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.