miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 5' -52.1 NC_005261.1 + 450 0.73 0.75835
Target:  5'- cGgGGACGggggccGCGACggCCGGCgggaUGGCGCg -3'
miRNA:   3'- -CgUCUGCa-----UGUUGaaGGUCG----ACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 1046 0.68 0.950196
Target:  5'- gGCGGGCG-GCGGCgu-UAGC-GGCGCg -3'
miRNA:   3'- -CGUCUGCaUGUUGaagGUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 1461 0.73 0.738386
Target:  5'- --cGGCGUGCGGC-UCCAGCa-GCGCg -3'
miRNA:   3'- cguCUGCAUGUUGaAGGUCGacCGCG- -5'
23760 5' -52.1 NC_005261.1 + 1548 0.66 0.97169
Target:  5'- cGCAGGCcagGUACAcCggCCgcAGC-GGCGCg -3'
miRNA:   3'- -CGUCUG---CAUGUuGaaGG--UCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 1868 0.68 0.950196
Target:  5'- -aAGACGcGCcGCgaggCCAGCacGGCGCg -3'
miRNA:   3'- cgUCUGCaUGuUGaa--GGUCGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 2648 0.67 0.954369
Target:  5'- cGCGGGCGggcagcgGCGGCUcccgCCGcGCUggggacccggcGGCGCg -3'
miRNA:   3'- -CGUCUGCa------UGUUGAa---GGU-CGA-----------CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 3430 0.68 0.931005
Target:  5'- cGCGGGC---CAGCgUCCAgGCgGGCGCg -3'
miRNA:   3'- -CGUCUGcauGUUGaAGGU-CGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 3544 0.66 0.981667
Target:  5'- --cGGCGcGCAGCg--CGGCgGGCGCg -3'
miRNA:   3'- cguCUGCaUGUUGaagGUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 3720 0.68 0.936183
Target:  5'- uCAGACGcGCcGCUgccggacgcgCCGGC-GGCGCa -3'
miRNA:   3'- cGUCUGCaUGuUGAa---------GGUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 3778 0.7 0.887661
Target:  5'- gGCAGGCcgcagcGCAGCgguccgCCAGCUcGCGCa -3'
miRNA:   3'- -CGUCUGca----UGUUGaa----GGUCGAcCGCG- -5'
23760 5' -52.1 NC_005261.1 + 3842 0.68 0.950196
Target:  5'- cGCuGGCG-GCAGCggcgCCGGCgccGCGCg -3'
miRNA:   3'- -CGuCUGCaUGUUGaa--GGUCGac-CGCG- -5'
23760 5' -52.1 NC_005261.1 + 3879 0.69 0.907746
Target:  5'- aGCAcGGCGcGCAGCUcggCgAGCgcGGCGCg -3'
miRNA:   3'- -CGU-CUGCaUGUUGAa--GgUCGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 4440 0.69 0.925573
Target:  5'- -aGGGCGUcaGCAGCgggcccUCCAGCggcGGCGg -3'
miRNA:   3'- cgUCUGCA--UGUUGa-----AGGUCGa--CCGCg -5'
23760 5' -52.1 NC_005261.1 + 4572 0.7 0.880479
Target:  5'- cGCGGGCGgg-----UCCGGCggGGCGCc -3'
miRNA:   3'- -CGUCUGCauguugaAGGUCGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 4809 0.73 0.75835
Target:  5'- --cGGCGU-CAACUUCCuccGCguugGGCGCa -3'
miRNA:   3'- cguCUGCAuGUUGAAGGu--CGa---CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 5091 0.73 0.757362
Target:  5'- cGCGGccaccauGCGccACAGCUccgCCAGCUcGGCGCg -3'
miRNA:   3'- -CGUC-------UGCa-UGUUGAa--GGUCGA-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 5515 0.69 0.913943
Target:  5'- gGCAG-CG-GCGGCgaggccgCCGGCUucGGCGCg -3'
miRNA:   3'- -CGUCuGCaUGUUGaa-----GGUCGA--CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 7882 0.73 0.748423
Target:  5'- gGCAG-CGaGCGGCUcuguUCCGGCgcGGCGCc -3'
miRNA:   3'- -CGUCuGCaUGUUGA----AGGUCGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 10258 0.66 0.983492
Target:  5'- cGCGGGCcugGCGcCUUCUgcccugaGGaCUGGCGCc -3'
miRNA:   3'- -CGUCUGca-UGUuGAAGG-------UC-GACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 12304 0.68 0.941106
Target:  5'- cGCGGGCacggGC-GCguagCCGGCgGGCGCg -3'
miRNA:   3'- -CGUCUGca--UGuUGaa--GGUCGaCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.