miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 3' -57.9 NC_005261.1 + 74278 0.66 0.796288
Target:  5'- cGUCCGCgGCGgGCgggGCGGUCGCCGCc- -3'
miRNA:   3'- -UAGGCG-CGCaCGa--UGCUGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 29228 0.66 0.796288
Target:  5'- -cCCGCGCaG-GCUACG-CCGCgGCGc -3'
miRNA:   3'- uaGGCGCG-CaCGAUGCuGGUGgUGUa -5'
23761 3' -57.9 NC_005261.1 + 100038 0.66 0.796288
Target:  5'- gGUCCGCggGCGUcaGCUcgaGCGcGCCGCCGCc- -3'
miRNA:   3'- -UAGGCG--CGCA--CGA---UGC-UGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 98792 0.66 0.796288
Target:  5'- -gCCGCGCGUGCgaaACGggucGCCgGCgGCGUg -3'
miRNA:   3'- uaGGCGCGCACGa--UGC----UGG-UGgUGUA- -5'
23761 3' -57.9 NC_005261.1 + 39528 0.66 0.796288
Target:  5'- -gCCGCGCGccuCUacGCGGCCGCCAg-- -3'
miRNA:   3'- uaGGCGCGCac-GA--UGCUGGUGGUgua -5'
23761 3' -57.9 NC_005261.1 + 21780 0.66 0.787119
Target:  5'- -gCCGcCGCG-GCgcgGGCCGCCGCAg -3'
miRNA:   3'- uaGGC-GCGCaCGaugCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 92323 0.66 0.787119
Target:  5'- gGUCCGCGCG-GCccauccGCGgGCCACCGg-- -3'
miRNA:   3'- -UAGGCGCGCaCGa-----UGC-UGGUGGUgua -5'
23761 3' -57.9 NC_005261.1 + 31781 0.66 0.787119
Target:  5'- -gCCGCG-GUGCUGCccgcggcgcaGugCGCCGCGc -3'
miRNA:   3'- uaGGCGCgCACGAUG----------CugGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 118419 0.66 0.787119
Target:  5'- -gCCGCGCuG-GCUGuCG-CCGCCGCGg -3'
miRNA:   3'- uaGGCGCG-CaCGAU-GCuGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 3864 0.66 0.787119
Target:  5'- -gCCGCGCG-GCcgGCGAgCACgGCGc -3'
miRNA:   3'- uaGGCGCGCaCGa-UGCUgGUGgUGUa -5'
23761 3' -57.9 NC_005261.1 + 29394 0.66 0.787119
Target:  5'- gAUCCGCgaggcggccGCGcGCUacGCGGCgGCCGCGg -3'
miRNA:   3'- -UAGGCG---------CGCaCGA--UGCUGgUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 106908 0.66 0.777808
Target:  5'- cGUCCGCGCcgcggcgcGCUGCagGGCCGCCAg-- -3'
miRNA:   3'- -UAGGCGCGca------CGAUG--CUGGUGGUgua -5'
23761 3' -57.9 NC_005261.1 + 87580 0.66 0.777808
Target:  5'- -cCCGCGCcgcccaggccgGUGgUcuuggugccgGCGACCACCGCGa -3'
miRNA:   3'- uaGGCGCG-----------CACgA----------UGCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 44973 0.66 0.777808
Target:  5'- --gCGCGCGaggGCccggGCgGGCCGCCACAg -3'
miRNA:   3'- uagGCGCGCa--CGa---UG-CUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 57367 0.66 0.777808
Target:  5'- -cCCGCGCG-GCccgACGcCCGCCAgCAg -3'
miRNA:   3'- uaGGCGCGCaCGa--UGCuGGUGGU-GUa -5'
23761 3' -57.9 NC_005261.1 + 57931 0.66 0.777808
Target:  5'- --aCGCGCGUGCUGCccggcACCAgCGCc- -3'
miRNA:   3'- uagGCGCGCACGAUGc----UGGUgGUGua -5'
23761 3' -57.9 NC_005261.1 + 100732 0.66 0.768365
Target:  5'- -gCCGCGCGcGCgcgcgGCGGCgCGCgGCAc -3'
miRNA:   3'- uaGGCGCGCaCGa----UGCUG-GUGgUGUa -5'
23761 3' -57.9 NC_005261.1 + 53993 0.66 0.768365
Target:  5'- cUCCaGCGCGcgGCgcacagGCG-CCGCCGCGa -3'
miRNA:   3'- uAGG-CGCGCa-CGa-----UGCuGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 21832 0.66 0.768365
Target:  5'- --gCGCGCGUGCggGCGggcucGCC-CCGCAg -3'
miRNA:   3'- uagGCGCGCACGa-UGC-----UGGuGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 31133 0.66 0.768365
Target:  5'- uUCCGcCGCGUGCcgcccgGgGAgUACCACAc -3'
miRNA:   3'- uAGGC-GCGCACGa-----UgCUgGUGGUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.