Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23761 | 3' | -57.9 | NC_005261.1 | + | 74278 | 0.66 | 0.796288 |
Target: 5'- cGUCCGCgGCGgGCgggGCGGUCGCCGCc- -3' miRNA: 3'- -UAGGCG-CGCaCGa--UGCUGGUGGUGua -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 29228 | 0.66 | 0.796288 |
Target: 5'- -cCCGCGCaG-GCUACG-CCGCgGCGc -3' miRNA: 3'- uaGGCGCG-CaCGAUGCuGGUGgUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 100038 | 0.66 | 0.796288 |
Target: 5'- gGUCCGCggGCGUcaGCUcgaGCGcGCCGCCGCc- -3' miRNA: 3'- -UAGGCG--CGCA--CGA---UGC-UGGUGGUGua -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 39528 | 0.66 | 0.796288 |
Target: 5'- -gCCGCGCGccuCUacGCGGCCGCCAg-- -3' miRNA: 3'- uaGGCGCGCac-GA--UGCUGGUGGUgua -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 98792 | 0.66 | 0.796288 |
Target: 5'- -gCCGCGCGUGCgaaACGggucGCCgGCgGCGUg -3' miRNA: 3'- uaGGCGCGCACGa--UGC----UGG-UGgUGUA- -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 31781 | 0.66 | 0.787119 |
Target: 5'- -gCCGCG-GUGCUGCccgcggcgcaGugCGCCGCGc -3' miRNA: 3'- uaGGCGCgCACGAUG----------CugGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 92323 | 0.66 | 0.787119 |
Target: 5'- gGUCCGCGCG-GCccauccGCGgGCCACCGg-- -3' miRNA: 3'- -UAGGCGCGCaCGa-----UGC-UGGUGGUgua -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 118419 | 0.66 | 0.787119 |
Target: 5'- -gCCGCGCuG-GCUGuCG-CCGCCGCGg -3' miRNA: 3'- uaGGCGCG-CaCGAU-GCuGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 29394 | 0.66 | 0.787119 |
Target: 5'- gAUCCGCgaggcggccGCGcGCUacGCGGCgGCCGCGg -3' miRNA: 3'- -UAGGCG---------CGCaCGA--UGCUGgUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 21780 | 0.66 | 0.787119 |
Target: 5'- -gCCGcCGCG-GCgcgGGCCGCCGCAg -3' miRNA: 3'- uaGGC-GCGCaCGaugCUGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 3864 | 0.66 | 0.787119 |
Target: 5'- -gCCGCGCG-GCcgGCGAgCACgGCGc -3' miRNA: 3'- uaGGCGCGCaCGa-UGCUgGUGgUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 106908 | 0.66 | 0.777808 |
Target: 5'- cGUCCGCGCcgcggcgcGCUGCagGGCCGCCAg-- -3' miRNA: 3'- -UAGGCGCGca------CGAUG--CUGGUGGUgua -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 57931 | 0.66 | 0.777808 |
Target: 5'- --aCGCGCGUGCUGCccggcACCAgCGCc- -3' miRNA: 3'- uagGCGCGCACGAUGc----UGGUgGUGua -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 57367 | 0.66 | 0.777808 |
Target: 5'- -cCCGCGCG-GCccgACGcCCGCCAgCAg -3' miRNA: 3'- uaGGCGCGCaCGa--UGCuGGUGGU-GUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 44973 | 0.66 | 0.777808 |
Target: 5'- --gCGCGCGaggGCccggGCgGGCCGCCACAg -3' miRNA: 3'- uagGCGCGCa--CGa---UG-CUGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 87580 | 0.66 | 0.777808 |
Target: 5'- -cCCGCGCcgcccaggccgGUGgUcuuggugccgGCGACCACCGCGa -3' miRNA: 3'- uaGGCGCG-----------CACgA----------UGCUGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 31133 | 0.66 | 0.768365 |
Target: 5'- uUCCGcCGCGUGCcgcccgGgGAgUACCACAc -3' miRNA: 3'- uAGGC-GCGCACGa-----UgCUgGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 21832 | 0.66 | 0.768365 |
Target: 5'- --gCGCGCGUGCggGCGggcucGCC-CCGCAg -3' miRNA: 3'- uagGCGCGCACGa-UGC-----UGGuGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 53993 | 0.66 | 0.768365 |
Target: 5'- cUCCaGCGCGcgGCgcacagGCG-CCGCCGCGa -3' miRNA: 3'- uAGG-CGCGCa-CGa-----UGCuGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 100732 | 0.66 | 0.768365 |
Target: 5'- -gCCGCGCGcGCgcgcgGCGGCgCGCgGCAc -3' miRNA: 3'- uaGGCGCGCaCGa----UGCUG-GUGgUGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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