miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 3' -57.9 NC_005261.1 + 42262 0.66 0.767413
Target:  5'- -cCCGCGCGaggcgGCcGCGcccagcaGCCGCCGCGa -3'
miRNA:   3'- uaGGCGCGCa----CGaUGC-------UGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 106908 0.66 0.777808
Target:  5'- cGUCCGCGCcgcggcgcGCUGCagGGCCGCCAg-- -3'
miRNA:   3'- -UAGGCGCGca------CGAUG--CUGGUGGUgua -5'
23761 3' -57.9 NC_005261.1 + 108417 0.66 0.758798
Target:  5'- -aCCGCgccuGCGUGC-ACGGCaACCGCGUc -3'
miRNA:   3'- uaGGCG----CGCACGaUGCUGgUGGUGUA- -5'
23761 3' -57.9 NC_005261.1 + 63020 0.66 0.768365
Target:  5'- -cCCGCGCGgGCgccgGCGcCCGCgGCGa -3'
miRNA:   3'- uaGGCGCGCaCGa---UGCuGGUGgUGUa -5'
23761 3' -57.9 NC_005261.1 + 110345 0.66 0.755905
Target:  5'- -gCUGCGCGcGCaccUgauuuccaacucggGCGACCGCCGCAUg -3'
miRNA:   3'- uaGGCGCGCaCG---A--------------UGCUGGUGGUGUA- -5'
23761 3' -57.9 NC_005261.1 + 100732 0.66 0.768365
Target:  5'- -gCCGCGCGcGCgcgcgGCGGCgCGCgGCAc -3'
miRNA:   3'- uaGGCGCGCaCGa----UGCUG-GUGgUGUa -5'
23761 3' -57.9 NC_005261.1 + 87580 0.66 0.777808
Target:  5'- -cCCGCGCcgcccaggccgGUGgUcuuggugccgGCGACCACCGCGa -3'
miRNA:   3'- uaGGCGCG-----------CACgA----------UGCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 31133 0.66 0.768365
Target:  5'- uUCCGcCGCGUGCcgcccgGgGAgUACCACAc -3'
miRNA:   3'- uAGGC-GCGCACGa-----UgCUgGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 100220 0.66 0.758798
Target:  5'- -cCCGCGUagaGCU-CGGCCACCGCc- -3'
miRNA:   3'- uaGGCGCGca-CGAuGCUGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 21832 0.66 0.768365
Target:  5'- --gCGCGCGUGCggGCGggcucGCC-CCGCAg -3'
miRNA:   3'- uagGCGCGCACGa-UGC-----UGGuGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 3864 0.66 0.787119
Target:  5'- -gCCGCGCG-GCcgGCGAgCACgGCGc -3'
miRNA:   3'- uaGGCGCGCaCGa-UGCUgGUGgUGUa -5'
23761 3' -57.9 NC_005261.1 + 12518 0.66 0.768365
Target:  5'- -aCCGCGCGggGCcccGCG-CCGCCGCc- -3'
miRNA:   3'- uaGGCGCGCa-CGa--UGCuGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 131179 0.66 0.768365
Target:  5'- -gCCGCaGCG-GCUACGcCCGCgGCGc -3'
miRNA:   3'- uaGGCG-CGCaCGAUGCuGGUGgUGUa -5'
23761 3' -57.9 NC_005261.1 + 44973 0.66 0.777808
Target:  5'- --gCGCGCGaggGCccggGCgGGCCGCCACAg -3'
miRNA:   3'- uagGCGCGCa--CGa---UG-CUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 57931 0.66 0.777808
Target:  5'- --aCGCGCGUGCUGCccggcACCAgCGCc- -3'
miRNA:   3'- uagGCGCGCACGAUGc----UGGUgGUGua -5'
23761 3' -57.9 NC_005261.1 + 57367 0.66 0.777808
Target:  5'- -cCCGCGCG-GCccgACGcCCGCCAgCAg -3'
miRNA:   3'- uaGGCGCGCaCGa--UGCuGGUGGU-GUa -5'
23761 3' -57.9 NC_005261.1 + 53993 0.66 0.768365
Target:  5'- cUCCaGCGCGcgGCgcacagGCG-CCGCCGCGa -3'
miRNA:   3'- uAGG-CGCGCa-CGa-----UGCuGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 100038 0.66 0.796288
Target:  5'- gGUCCGCggGCGUcaGCUcgaGCGcGCCGCCGCc- -3'
miRNA:   3'- -UAGGCG--CGCA--CGA---UGC-UGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 73125 0.66 0.754939
Target:  5'- cGUCCGCGCGguccccgggccggGCUcGCG-CCGCCAgGc -3'
miRNA:   3'- -UAGGCGCGCa------------CGA-UGCuGGUGGUgUa -5'
23761 3' -57.9 NC_005261.1 + 4846 0.66 0.762639
Target:  5'- cGUCCGCGCcgcagccucaaggGCgGCGGCCACgACGg -3'
miRNA:   3'- -UAGGCGCGca-----------CGaUGCUGGUGgUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.