miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 3' -57.9 NC_005261.1 + 21780 0.66 0.787119
Target:  5'- -gCCGcCGCG-GCgcgGGCCGCCGCAg -3'
miRNA:   3'- uaGGC-GCGCaCGaugCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 92323 0.66 0.787119
Target:  5'- gGUCCGCGCG-GCccauccGCGgGCCACCGg-- -3'
miRNA:   3'- -UAGGCGCGCaCGa-----UGC-UGGUGGUgua -5'
23761 3' -57.9 NC_005261.1 + 106908 0.66 0.777808
Target:  5'- cGUCCGCGCcgcggcgcGCUGCagGGCCGCCAg-- -3'
miRNA:   3'- -UAGGCGCGca------CGAUG--CUGGUGGUgua -5'
23761 3' -57.9 NC_005261.1 + 118419 0.66 0.787119
Target:  5'- -gCCGCGCuG-GCUGuCG-CCGCCGCGg -3'
miRNA:   3'- uaGGCGCG-CaCGAU-GCuGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 73125 0.66 0.754939
Target:  5'- cGUCCGCGCGguccccgggccggGCUcGCG-CCGCCAgGc -3'
miRNA:   3'- -UAGGCGCGCa------------CGA-UGCuGGUGGUgUa -5'
23761 3' -57.9 NC_005261.1 + 63020 0.66 0.768365
Target:  5'- -cCCGCGCGgGCgccgGCGcCCGCgGCGa -3'
miRNA:   3'- uaGGCGCGCaCGa---UGCuGGUGgUGUa -5'
23761 3' -57.9 NC_005261.1 + 57367 0.66 0.777808
Target:  5'- -cCCGCGCG-GCccgACGcCCGCCAgCAg -3'
miRNA:   3'- uaGGCGCGCaCGa--UGCuGGUGGU-GUa -5'
23761 3' -57.9 NC_005261.1 + 57931 0.66 0.777808
Target:  5'- --aCGCGCGUGCUGCccggcACCAgCGCc- -3'
miRNA:   3'- uagGCGCGCACGAUGc----UGGUgGUGua -5'
23761 3' -57.9 NC_005261.1 + 4846 0.66 0.762639
Target:  5'- cGUCCGCGCcgcagccucaaggGCgGCGGCCACgACGg -3'
miRNA:   3'- -UAGGCGCGca-----------CGaUGCUGGUGgUGUa -5'
23761 3' -57.9 NC_005261.1 + 44973 0.66 0.777808
Target:  5'- --gCGCGCGaggGCccggGCgGGCCGCCACAg -3'
miRNA:   3'- uagGCGCGCa--CGa---UG-CUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 77039 0.67 0.739331
Target:  5'- -gCCGCGCGcGCggcccuCGGCgACCGCGc -3'
miRNA:   3'- uaGGCGCGCaCGau----GCUGgUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 118083 0.67 0.749117
Target:  5'- -gCCGCGCucgucUGCUgGCGGCCcGCCGCGc -3'
miRNA:   3'- uaGGCGCGc----ACGA-UGCUGG-UGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 1717 0.67 0.719485
Target:  5'- -cUCGCGCGgcgGC-ACGGgCACCGCGg -3'
miRNA:   3'- uaGGCGCGCa--CGaUGCUgGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 118214 0.67 0.719485
Target:  5'- -gCUGCGCGggGCgcugACGGCCgcgGCCGCGg -3'
miRNA:   3'- uaGGCGCGCa-CGa---UGCUGG---UGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 81717 0.67 0.709442
Target:  5'- gGUCCGCGCGcaGCaGCGGCacgcguCCGCAg -3'
miRNA:   3'- -UAGGCGCGCa-CGaUGCUGgu----GGUGUa -5'
23761 3' -57.9 NC_005261.1 + 68668 0.67 0.709442
Target:  5'- -cCCGCGCc-GCcgGCGuCCGCCGCGUg -3'
miRNA:   3'- uaGGCGCGcaCGa-UGCuGGUGGUGUA- -5'
23761 3' -57.9 NC_005261.1 + 100677 0.67 0.699334
Target:  5'- gGUUCGCGCGcgagUGCaccGCGGCCGCgGCGc -3'
miRNA:   3'- -UAGGCGCGC----ACGa--UGCUGGUGgUGUa -5'
23761 3' -57.9 NC_005261.1 + 119063 0.67 0.699334
Target:  5'- -gCCGCGCGUGUgcuuucgUGGCCcggGCCACGa -3'
miRNA:   3'- uaGGCGCGCACGau-----GCUGG---UGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 118273 0.67 0.699334
Target:  5'- -aCUGCGCGcacuucGUgACGGCCGCCGCGg -3'
miRNA:   3'- uaGGCGCGCa-----CGaUGCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 98758 0.67 0.699334
Target:  5'- -gCCGCGCGguugccGCUGCcGCCGCCGg-- -3'
miRNA:   3'- uaGGCGCGCa-----CGAUGcUGGUGGUgua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.