miRNA display CGI


Results 41 - 60 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 3' -57.9 NC_005261.1 + 4295 0.67 0.719485
Target:  5'- -gCCGCGgGccCcGCGGCCGCCGCGUa -3'
miRNA:   3'- uaGGCGCgCacGaUGCUGGUGGUGUA- -5'
23761 3' -57.9 NC_005261.1 + 130690 0.67 0.749117
Target:  5'- --gCGCGCGUGCUGCucGAgCACCuCGc -3'
miRNA:   3'- uagGCGCGCACGAUG--CUgGUGGuGUa -5'
23761 3' -57.9 NC_005261.1 + 103442 0.67 0.739331
Target:  5'- --gCGCGCGccucGCgguCGGCCGCCGCGc -3'
miRNA:   3'- uagGCGCGCa---CGau-GCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 77039 0.67 0.739331
Target:  5'- -gCCGCGCGcGCggcccuCGGCgACCGCGc -3'
miRNA:   3'- uaGGCGCGCaCGau----GCUGgUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 67945 0.67 0.739331
Target:  5'- -cCCGC-CGgcccGCUcgcGCGGCCGCCGCGg -3'
miRNA:   3'- uaGGCGcGCa---CGA---UGCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 51971 0.67 0.739331
Target:  5'- -gCCGCGC-UGCUG-GACCGCgGCGc -3'
miRNA:   3'- uaGGCGCGcACGAUgCUGGUGgUGUa -5'
23761 3' -57.9 NC_005261.1 + 32152 0.67 0.749117
Target:  5'- cUCgGCGCGccGCUGCGGCCgguguACCugGc -3'
miRNA:   3'- uAGgCGCGCa-CGAUGCUGG-----UGGugUa -5'
23761 3' -57.9 NC_005261.1 + 53710 0.67 0.749117
Target:  5'- -gCCGCGCGccgcggccaGCUGCGGCgCGcCCGCAc -3'
miRNA:   3'- uaGGCGCGCa--------CGAUGCUG-GU-GGUGUa -5'
23761 3' -57.9 NC_005261.1 + 118083 0.67 0.749117
Target:  5'- -gCCGCGCucgucUGCUgGCGGCCcGCCGCGc -3'
miRNA:   3'- uaGGCGCGc----ACGA-UGCUGG-UGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 101060 0.67 0.730443
Target:  5'- cGUCCGCGCGcagccccagcaccacGCccGCGGCCGCCuGCAg -3'
miRNA:   3'- -UAGGCGCGCa--------------CGa-UGCUGGUGG-UGUa -5'
23761 3' -57.9 NC_005261.1 + 121913 0.67 0.729451
Target:  5'- cGUCUGCGCGccgUGCG-CCGCCACGc -3'
miRNA:   3'- -UAGGCGCGCacgAUGCuGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 104122 0.67 0.729451
Target:  5'- -gCCGCGCGguucgccgcgaGCU-CGGCCGCCAgGUc -3'
miRNA:   3'- uaGGCGCGCa----------CGAuGCUGGUGGUgUA- -5'
23761 3' -57.9 NC_005261.1 + 55418 0.67 0.749117
Target:  5'- --gCGCGCGccgGCUgGCG-CCACCGCGa -3'
miRNA:   3'- uagGCGCGCa--CGA-UGCuGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 70923 0.67 0.729451
Target:  5'- -cCCGCGCGaGCUccaGCG-CCugCGCGUc -3'
miRNA:   3'- uaGGCGCGCaCGA---UGCuGGugGUGUA- -5'
23761 3' -57.9 NC_005261.1 + 109232 0.68 0.678953
Target:  5'- -gCCGCGCGcUGCagcGCGGCCcagugcgggGCCACGa -3'
miRNA:   3'- uaGGCGCGC-ACGa--UGCUGG---------UGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 90530 0.68 0.668699
Target:  5'- cAUCCGCGCGcGCaucccCG-CCGCCGCGc -3'
miRNA:   3'- -UAGGCGCGCaCGau---GCuGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 69481 0.68 0.668699
Target:  5'- cAUCCGCGCGaUGCUG-GugCACCuguACGc -3'
miRNA:   3'- -UAGGCGCGC-ACGAUgCugGUGG---UGUa -5'
23761 3' -57.9 NC_005261.1 + 67120 0.68 0.668699
Target:  5'- --gCGCGCaGUGCgGCGGCCcgACCGCGg -3'
miRNA:   3'- uagGCGCG-CACGaUGCUGG--UGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 49538 0.68 0.668699
Target:  5'- -gCCGC-CGU-CcGCGGCCACCACGUg -3'
miRNA:   3'- uaGGCGcGCAcGaUGCUGGUGGUGUA- -5'
23761 3' -57.9 NC_005261.1 + 115704 0.68 0.668699
Target:  5'- uGUCCGU-CGUGUagACGugCGCCACGg -3'
miRNA:   3'- -UAGGCGcGCACGa-UGCugGUGGUGUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.