miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 3' -57.9 NC_005261.1 + 104514 0.69 0.606842
Target:  5'- cUCCGUgGCGgccGCgacgGCGGCCGCCACc- -3'
miRNA:   3'- uAGGCG-CGCa--CGa---UGCUGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 85014 0.69 0.606842
Target:  5'- -gCCGCGgGgucGC-GCGGCCGCCGCGc -3'
miRNA:   3'- uaGGCGCgCa--CGaUGCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 104671 0.69 0.606842
Target:  5'- ---gGCGUGUGCUGCGgcagcgccuggGCCACCGCc- -3'
miRNA:   3'- uaggCGCGCACGAUGC-----------UGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 87030 0.69 0.602724
Target:  5'- -cCCGCGCGccaccgcguccagGCUGCGcacacgcagcGCCACCGCGg -3'
miRNA:   3'- uaGGCGCGCa------------CGAUGC----------UGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 118572 0.69 0.586292
Target:  5'- -cCCGCGCGcGCggcgGCGcgcgccGCCGCCGCGg -3'
miRNA:   3'- uaGGCGCGCaCGa---UGC------UGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 93810 0.69 0.586292
Target:  5'- -gCCGCGCGccGCcGCcACCGCCGCAg -3'
miRNA:   3'- uaGGCGCGCa-CGaUGcUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 115704 0.68 0.668699
Target:  5'- uGUCCGU-CGUGUagACGugCGCCACGg -3'
miRNA:   3'- -UAGGCGcGCACGa-UGCugGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 49538 0.68 0.668699
Target:  5'- -gCCGC-CGU-CcGCGGCCACCACGUg -3'
miRNA:   3'- uaGGCGcGCAcGaUGCUGGUGGUGUA- -5'
23761 3' -57.9 NC_005261.1 + 67120 0.68 0.668699
Target:  5'- --gCGCGCaGUGCgGCGGCCcgACCGCGg -3'
miRNA:   3'- uagGCGCG-CACGaUGCUGG--UGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 69481 0.68 0.668699
Target:  5'- cAUCCGCGCGaUGCUG-GugCACCuguACGc -3'
miRNA:   3'- -UAGGCGCGC-ACGAUgCugGUGG---UGUa -5'
23761 3' -57.9 NC_005261.1 + 90530 0.68 0.668699
Target:  5'- cAUCCGCGCGcGCaucccCG-CCGCCGCGc -3'
miRNA:   3'- -UAGGCGCGCaCGau---GCuGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 109232 0.68 0.678953
Target:  5'- -gCCGCGCGcUGCagcGCGGCCcagugcgggGCCACGa -3'
miRNA:   3'- uaGGCGCGC-ACGa--UGCUGG---------UGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 76368 0.68 0.668699
Target:  5'- --gCGCGCGUGCacccGCGcuGCCGCCGCc- -3'
miRNA:   3'- uagGCGCGCACGa---UGC--UGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 27980 0.68 0.668699
Target:  5'- uUCCGCGCGcGCUucucccgcCGGCCucuCCGCGa -3'
miRNA:   3'- uAGGCGCGCaCGAu-------GCUGGu--GGUGUa -5'
23761 3' -57.9 NC_005261.1 + 39459 0.68 0.658415
Target:  5'- cUCCGCGCGgcgcgGCgccccaACGGgcCCGCCGCGg -3'
miRNA:   3'- uAGGCGCGCa----CGa-----UGCU--GGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 106407 0.68 0.64811
Target:  5'- cAUCCGCGCGgcGCUGCagcgGGCCGcgguCCACGc -3'
miRNA:   3'- -UAGGCGCGCa-CGAUG----CUGGU----GGUGUa -5'
23761 3' -57.9 NC_005261.1 + 130101 0.68 0.637792
Target:  5'- gGUCCGCGCcagcgacUGCgccuugGCGAgCCGCCGCGc -3'
miRNA:   3'- -UAGGCGCGc------ACGa-----UGCU-GGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 128837 0.68 0.637792
Target:  5'- -cUCGCGCG-GCU--GGCCGCCACGg -3'
miRNA:   3'- uaGGCGCGCaCGAugCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 101535 0.68 0.637792
Target:  5'- -gUCGCGCGccGCcuCGGCCGCCACGa -3'
miRNA:   3'- uaGGCGCGCa-CGauGCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 63723 0.68 0.678953
Target:  5'- gGUCCGUgagcgGCGUGCgcAUGGCCGCgGCGg -3'
miRNA:   3'- -UAGGCG-----CGCACGa-UGCUGGUGgUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.