Results 61 - 80 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23761 | 3' | -57.9 | NC_005261.1 | + | 130101 | 0.68 | 0.637792 |
Target: 5'- gGUCCGCGCcagcgacUGCgccuugGCGAgCCGCCGCGc -3' miRNA: 3'- -UAGGCGCGc------ACGa-----UGCU-GGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 106407 | 0.68 | 0.64811 |
Target: 5'- cAUCCGCGCGgcGCUGCagcgGGCCGcgguCCACGc -3' miRNA: 3'- -UAGGCGCGCa-CGAUG----CUGGU----GGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 39459 | 0.68 | 0.658415 |
Target: 5'- cUCCGCGCGgcgcgGCgccccaACGGgcCCGCCGCGg -3' miRNA: 3'- uAGGCGCGCa----CGa-----UGCU--GGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 27980 | 0.68 | 0.668699 |
Target: 5'- uUCCGCGCGcGCUucucccgcCGGCCucuCCGCGa -3' miRNA: 3'- uAGGCGCGCaCGAu-------GCUGGu--GGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 76368 | 0.68 | 0.668699 |
Target: 5'- --gCGCGCGUGCacccGCGcuGCCGCCGCc- -3' miRNA: 3'- uagGCGCGCACGa---UGC--UGGUGGUGua -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 4295 | 0.67 | 0.719485 |
Target: 5'- -gCCGCGgGccCcGCGGCCGCCGCGUa -3' miRNA: 3'- uaGGCGCgCacGaUGCUGGUGGUGUA- -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 104122 | 0.67 | 0.729451 |
Target: 5'- -gCCGCGCGguucgccgcgaGCU-CGGCCGCCAgGUc -3' miRNA: 3'- uaGGCGCGCa----------CGAuGCUGGUGGUgUA- -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 70923 | 0.67 | 0.729451 |
Target: 5'- -cCCGCGCGaGCUccaGCG-CCugCGCGUc -3' miRNA: 3'- uaGGCGCGCaCGA---UGCuGGugGUGUA- -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 121913 | 0.67 | 0.729451 |
Target: 5'- cGUCUGCGCGccgUGCG-CCGCCACGc -3' miRNA: 3'- -UAGGCGCGCacgAUGCuGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 101060 | 0.67 | 0.730443 |
Target: 5'- cGUCCGCGCGcagccccagcaccacGCccGCGGCCGCCuGCAg -3' miRNA: 3'- -UAGGCGCGCa--------------CGa-UGCUGGUGG-UGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 51971 | 0.67 | 0.739331 |
Target: 5'- -gCCGCGC-UGCUG-GACCGCgGCGc -3' miRNA: 3'- uaGGCGCGcACGAUgCUGGUGgUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 1717 | 0.67 | 0.719485 |
Target: 5'- -cUCGCGCGgcgGC-ACGGgCACCGCGg -3' miRNA: 3'- uaGGCGCGCa--CGaUGCUgGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 118214 | 0.67 | 0.719485 |
Target: 5'- -gCUGCGCGggGCgcugACGGCCgcgGCCGCGg -3' miRNA: 3'- uaGGCGCGCa-CGa---UGCUGG---UGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 81717 | 0.67 | 0.709442 |
Target: 5'- gGUCCGCGCGcaGCaGCGGCacgcguCCGCAg -3' miRNA: 3'- -UAGGCGCGCa-CGaUGCUGgu----GGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 68668 | 0.67 | 0.709442 |
Target: 5'- -cCCGCGCc-GCcgGCGuCCGCCGCGUg -3' miRNA: 3'- uaGGCGCGcaCGa-UGCuGGUGGUGUA- -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 100677 | 0.67 | 0.699334 |
Target: 5'- gGUUCGCGCGcgagUGCaccGCGGCCGCgGCGc -3' miRNA: 3'- -UAGGCGCGC----ACGa--UGCUGGUGgUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 119063 | 0.67 | 0.699334 |
Target: 5'- -gCCGCGCGUGUgcuuucgUGGCCcggGCCACGa -3' miRNA: 3'- uaGGCGCGCACGau-----GCUGG---UGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 118273 | 0.67 | 0.699334 |
Target: 5'- -aCUGCGCGcacuucGUgACGGCCGCCGCGg -3' miRNA: 3'- uaGGCGCGCa-----CGaUGCUGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 98758 | 0.67 | 0.699334 |
Target: 5'- -gCCGCGCGguugccGCUGCcGCCGCCGg-- -3' miRNA: 3'- uaGGCGCGCa-----CGAUGcUGGUGGUgua -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 67945 | 0.67 | 0.739331 |
Target: 5'- -cCCGC-CGgcccGCUcgcGCGGCCGCCGCGg -3' miRNA: 3'- uaGGCGcGCa---CGA---UGCUGGUGGUGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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