miRNA display CGI


Results 81 - 100 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 3' -57.9 NC_005261.1 + 118273 0.67 0.699334
Target:  5'- -aCUGCGCGcacuucGUgACGGCCGCCGCGg -3'
miRNA:   3'- uaGGCGCGCa-----CGaUGCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 119063 0.67 0.699334
Target:  5'- -gCCGCGCGUGUgcuuucgUGGCCcggGCCACGa -3'
miRNA:   3'- uaGGCGCGCACGau-----GCUGG---UGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 100677 0.67 0.699334
Target:  5'- gGUUCGCGCGcgagUGCaccGCGGCCGCgGCGc -3'
miRNA:   3'- -UAGGCGCGC----ACGa--UGCUGGUGgUGUa -5'
23761 3' -57.9 NC_005261.1 + 68668 0.67 0.709442
Target:  5'- -cCCGCGCc-GCcgGCGuCCGCCGCGUg -3'
miRNA:   3'- uaGGCGCGcaCGa-UGCuGGUGGUGUA- -5'
23761 3' -57.9 NC_005261.1 + 81717 0.67 0.709442
Target:  5'- gGUCCGCGCGcaGCaGCGGCacgcguCCGCAg -3'
miRNA:   3'- -UAGGCGCGCa-CGaUGCUGgu----GGUGUa -5'
23761 3' -57.9 NC_005261.1 + 118214 0.67 0.719485
Target:  5'- -gCUGCGCGggGCgcugACGGCCgcgGCCGCGg -3'
miRNA:   3'- uaGGCGCGCa-CGa---UGCUGG---UGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 1717 0.67 0.719485
Target:  5'- -cUCGCGCGgcgGC-ACGGgCACCGCGg -3'
miRNA:   3'- uaGGCGCGCa--CGaUGCUgGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 4295 0.67 0.719485
Target:  5'- -gCCGCGgGccCcGCGGCCGCCGCGUa -3'
miRNA:   3'- uaGGCGCgCacGaUGCUGGUGGUGUA- -5'
23761 3' -57.9 NC_005261.1 + 104122 0.67 0.729451
Target:  5'- -gCCGCGCGguucgccgcgaGCU-CGGCCGCCAgGUc -3'
miRNA:   3'- uaGGCGCGCa----------CGAuGCUGGUGGUgUA- -5'
23761 3' -57.9 NC_005261.1 + 21832 0.66 0.768365
Target:  5'- --gCGCGCGUGCggGCGggcucGCC-CCGCAg -3'
miRNA:   3'- uagGCGCGCACGa-UGC-----UGGuGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 31133 0.66 0.768365
Target:  5'- uUCCGcCGCGUGCcgcccgGgGAgUACCACAc -3'
miRNA:   3'- uAGGC-GCGCACGa-----UgCUgGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 100732 0.66 0.768365
Target:  5'- -gCCGCGCGcGCgcgcgGCGGCgCGCgGCAc -3'
miRNA:   3'- uaGGCGCGCaCGa----UGCUG-GUGgUGUa -5'
23761 3' -57.9 NC_005261.1 + 131179 0.66 0.768365
Target:  5'- -gCCGCaGCG-GCUACGcCCGCgGCGc -3'
miRNA:   3'- uaGGCG-CGCaCGAUGCuGGUGgUGUa -5'
23761 3' -57.9 NC_005261.1 + 42262 0.66 0.767413
Target:  5'- -cCCGCGCGaggcgGCcGCGcccagcaGCCGCCGCGa -3'
miRNA:   3'- uaGGCGCGCa----CGaUGC-------UGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 4846 0.66 0.762639
Target:  5'- cGUCCGCGCcgcagccucaaggGCgGCGGCCACgACGg -3'
miRNA:   3'- -UAGGCGCGca-----------CGaUGCUGGUGgUGUa -5'
23761 3' -57.9 NC_005261.1 + 15799 0.66 0.758798
Target:  5'- -cCCGCGCG-GCcaGCG-CCGCCACc- -3'
miRNA:   3'- uaGGCGCGCaCGa-UGCuGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 100220 0.66 0.758798
Target:  5'- -cCCGCGUagaGCU-CGGCCACCGCc- -3'
miRNA:   3'- uaGGCGCGca-CGAuGCUGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 108417 0.66 0.758798
Target:  5'- -aCCGCgccuGCGUGC-ACGGCaACCGCGUc -3'
miRNA:   3'- uaGGCG----CGCACGaUGCUGgUGGUGUA- -5'
23761 3' -57.9 NC_005261.1 + 110345 0.66 0.755905
Target:  5'- -gCUGCGCGcGCaccUgauuuccaacucggGCGACCGCCGCAUg -3'
miRNA:   3'- uaGGCGCGCaCG---A--------------UGCUGGUGGUGUA- -5'
23761 3' -57.9 NC_005261.1 + 100038 0.66 0.796288
Target:  5'- gGUCCGCggGCGUcaGCUcgaGCGcGCCGCCGCc- -3'
miRNA:   3'- -UAGGCG--CGCA--CGA---UGC-UGGUGGUGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.